Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_M08
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   2.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 386 IRFTFKSLDAFPANSKTSAVRYSKIAAE*TAAVAPTRPW 270
           I+FT +    FP N+ +    +S +  E   A     PW
Sbjct: 90  IKFTTRDCSLFPGNALSCKETFSLLYYEFDVATKEPPPW 128


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 446 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 342
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 276 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 310


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 446 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 342
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 244 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 278


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 714 ISITYSYIFSPDQQFQSH 661
           I+ TYS   SPD QF ++
Sbjct: 474 INFTYSLALSPDGQFGNY 491


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 720 LHISITYSYIFSPDQQFQSHHCP 652
           LH+ +T     SP  Q Q+  CP
Sbjct: 671 LHLHLTSPPARSPSSQAQASQCP 693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,232
Number of Sequences: 438
Number of extensions: 4242
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)