Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_M06
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 3.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 3.6
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 4.8
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 6.3
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 6.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.3
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 6.3
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 586 NTKKAAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTATGEIKDHTK 738
N +K +++ +S+ LES K A++ ET + I T E+K+ K
Sbjct: 278 NQQKQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTLENEVKEARK 328
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTATGEIK 726
L+ KDT TA + E + ++ + TLE T S Q + KS + T E K
Sbjct: 313 LEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLE-TVSEEQMGSSNAKSKV--LTSEPK 369
Query: 727 DHT 735
D T
Sbjct: 370 DST 372
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 653 VLNRLLRPRRKPENRTSTLPQVKSKTILKALSIIPIT 763
V+ R RPRR + R T ++ + K + ++PIT
Sbjct: 110 VVKRDFRPRRPEQTRPYTYDFLRHQIEFKRIGLVPIT 146
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 535 HQLRLCWRRPQPLLLQATPS 476
H CWR PL+ +A PS
Sbjct: 391 HSYPFCWRSDTPLIYRAVPS 410
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 687
+DT T++TT + + + +A DTV T+E + A T T
Sbjct: 213 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 259
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 687
+DT T++TT + + + +A DTV T+E + A T T
Sbjct: 285 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 331
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 687
+DT T++TT + + + +A DTV T+E + A T T
Sbjct: 357 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 403
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 687
+DT T++TT + + + +A DTV T+E + A T T
Sbjct: 429 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 475
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 687
+DT T++TT + + + +A DTV T+E + A T T
Sbjct: 501 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 547
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 687
+DT T++TT + + + +A DTV T+E + A T T
Sbjct: 573 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 619
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 556 TKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTA 711
T +L++++ N+ +A + ++ TVSS+ T S + TAA + + +A
Sbjct: 223 TSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSA 274
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 544 PSSHQLRLCWRRPQPLLLQATP 479
P H+ WR +PL+L+ATP
Sbjct: 419 PYKHRYPYDWRTHKPLILRATP 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,876
Number of Sequences: 5004
Number of extensions: 58529
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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