Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_M06
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 36 0.058
05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824 32 0.54
11_01_0545 + 4308167-4308496 32 0.71
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 32 0.71
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 31 1.6
02_02_0183 + 7576901-7576908,7577666-7578176 31 1.6
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.2
12_02_0010 - 12275652-12276221,12276804-12276935 30 2.9
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 29 3.8
04_03_1017 + 21747044-21748051 29 5.0
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 29 5.0
02_05_1008 - 33461225-33462334 29 5.0
01_05_0602 + 23577328-23579805 29 5.0
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 28 8.8
02_02_0280 - 8515894-8517309 28 8.8
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 35.5 bits (78), Expect = 0.058
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 323 PRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQE 499
PRRHR P + R RR A+ + P PP + P +TP T N R + E
Sbjct: 13 PRRHRHGPATPRRRRRRHAAAVATPPPPPPRRRANRCPDAATPPLTNENENDRTNESENE 72
Query: 500 RLRT 511
RT
Sbjct: 73 NDRT 76
>05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824
Length = 200
Score = 32.3 bits (70), Expect = 0.54
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 547 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAETGKSYID 705
+ +KD S D +AA A +DT +T E ++A + A+ET ++ D
Sbjct: 27 MGASKDKASEAKDRASEAAGHAAGKGQDTKEATKEKAQAAKERASETAQAAKD 79
>11_01_0545 + 4308167-4308496
Length = 109
Score = 31.9 bits (69), Expect = 0.71
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 306 CRATCRREGTGSRPRCRRPGQEGGRAYWWSREIRQRCC 419
C + TG RCR G G A W S++I+ CC
Sbjct: 61 CIPVAACDDTGCAIRCRDLGYNPGSACWTSKDIKLYCC 98
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 31.9 bits (69), Expect = 0.71
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +2
Query: 239 ESQAHFVASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTML 418
E++A A ARR SS+ S PP RKPP + ++R L P N P
Sbjct: 10 EAEADLQALARRFSFSSSSSPS-PSPSPPSSSRKPPLPPRRSPQKRPGLPTIPENGPPAG 68
Query: 419 LAQLPMQSTPQSTPST 466
+A TP++
Sbjct: 69 MATATATPKRTRTPTS 84
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 293 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTP 448
G S+LP RR R+PP RRR +P +PP LP ++P
Sbjct: 10 GTSSSSSSLPSRRRRRPP---PRLGRRRGGDDQQPPHPPKASSEALPCAASP 58
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 309 RATCRREGTGSRPRCRRPGQEGGRAYWWSREIRQRC 416
R R+ G G R R RR G GG A W R+ RC
Sbjct: 47 RRPARQRGGGGRRRRRRCGGGGGGAARWIRQPLARC 82
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 619 TAKDTVSSTLESTKSAAQTAAETGKSYIDTATGEIKDHTKGI 744
TA +T+S+T E T + + A+E IDT TGEI D + +
Sbjct: 748 TASETISNTQELTIAGSIEASEDN---IDTKTGEITDQSNEV 786
>12_02_0010 - 12275652-12276221,12276804-12276935
Length = 233
Score = 29.9 bits (64), Expect = 2.9
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +2
Query: 224 QKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRRH---RKP--PTL*KTRSRRRASLL 388
QK AH + + H+ S RR+ S L P+ R P L T A+
Sbjct: 43 QKVCRCQPAHTLGPPLKRHIRSKSGRRVSSQLQPKEKEAVRSPCDVILQCTTVGYSAADK 102
Query: 389 VEPRNPPTMLLAQLPMQSTPQSTPST 466
PR P T LLA S+P S T
Sbjct: 103 AAPRRPTTSLLALATAASSPSSAEVT 128
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 558 CSVKDLLPISYGFVGGVRSLSCCKRHLRKFLVDGVDCGVLCI 433
C L+PI+ FV R C K+ LR+ + GVD +LC+
Sbjct: 818 CQCLSLMPIASLFVVSFR---CGKQRLREARIQGVDYLILCL 856
>04_03_1017 + 21747044-21748051
Length = 335
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Frame = +2
Query: 320 PPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQST-------PQSTPSTRNFR 478
PPRR P T RR AS P +PP + Q T P TPST
Sbjct: 212 PPRRAASPDYSPSTPPRRAASPDYTPMSPPRRAASPDYTQMTPPRRAASPDYTPSTPPPP 271
Query: 479 RCRLQQERLRTPPTKP*LMGRRSLTL 556
R TPP+ P S T+
Sbjct: 272 RAASPDYTPSTPPSSPLPSAAESFTV 297
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/84 (32%), Positives = 35/84 (41%)
Frame = +2
Query: 260 ASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQ 439
A R ST R + P RR PPT RSR R+ P PP Q P
Sbjct: 30 ARTPRAPFPSTSRSSNPYSFPDRR--PPPT---PRSRSRS-----PLPPPEQQKQQQPPP 79
Query: 440 STPQSTPSTRNFRRCRLQQERLRT 511
+TP P R+ R +++ +RT
Sbjct: 80 TTPPPAPRRRDPRYAGVRRGDVRT 103
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 293 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVE-PRNPPTMLLAQLPMQSTPQSTPST 466
G +++ L ++ ++P T RSRRR L + P+ T L LP+ P S PS+
Sbjct: 5 GPPSLRAGLQQQQQQQPGT--PGRSRRRPDLTLPLPQRDLTSLAVPLPLPLPPSSAPSS 61
>01_05_0602 + 23577328-23579805
Length = 825
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 311 SNLP-PRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCR 487
++LP P H +P +RS RR + P PP L ++L +PS R+ R R
Sbjct: 2 ASLPLPALHHEPLL---SRSHRR----LPPSPPPPPLPSRLAAAHPSAPSPSPRDDERLR 54
Query: 488 LQQERLRT 511
L+ E LR+
Sbjct: 55 LRAEELRS 62
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +2
Query: 320 PPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQ-Q 496
PP+ KPP + R A+ P+ P ++ P Q P + + R+ +
Sbjct: 68 PPKHPGKPPKDIQEVPSRAAAAAAAPKAQPAQVIQAPPPQPPPSESIQIETGKEHRITFR 127
Query: 497 ERLRTPPTKP 526
E+ PP P
Sbjct: 128 EQQHQPPQPP 137
>02_02_0280 - 8515894-8517309
Length = 471
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 577 TADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTAT 714
T D K AA + DT++ A AAE+GK+ T T
Sbjct: 370 TKDTVKDAAAAMAQKTSDTIAQAGHGAGEAKNRAAESGKNSSATTT 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,653,547
Number of Sequences: 37544
Number of extensions: 414547
Number of successful extensions: 1357
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -