Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_M05
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 31 1.6
07_03_1028 - 23378140-23378802 29 3.7
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 4.9
08_01_0156 - 1233431-1233925 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
06_03_0218 + 18219956-18220555 28 8.6
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.6
03_04_0061 - 16949038-16950006 28 8.6
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 519 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 677
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +2
Query: 629 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCV-HEP-- 793
P S+ + +PVPTLP++ + F G S H + R Y S G V HEP
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341
Query: 794 PFSPTAAP-YP 823
P P AAP YP
Sbjct: 342 PSYPPAAPSYP 352
>07_03_1028 - 23378140-23378802
Length = 220
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = -2
Query: 850 YRLTQDD-SYRIRRSGRAERGFVHTAQLGANDLHRTEIPTA*AMRKRHASRRE-KGGQVS 677
Y DD +YR + + + A++ N R A + R R +GG +
Sbjct: 68 YHYDDDDYAYRASKKKKQQAAAEQAARMPNNRTTRPTTRRASSSRSRTKEESHARGGGAA 127
Query: 676 GKRQGRNRRAHEGASRG-KRLVSL*SCRVSPPLT 578
+R+ ++R+ G R +R ++ RV PP T
Sbjct: 128 PRRENKDRKDGAGGRRSQRRAPTISGPRVPPPAT 161
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = -2
Query: 841 TQDDSYRIRRSGRAERGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQG 662
+Q + +++R A+ G + ++ +++H+++ + + +R A REK G +
Sbjct: 91 SQSEIHQLRIQAIAKDGEIERLKVEISEVHKSKSQSLELIEQRDAEIREKDGIIQNYLDK 150
Query: 661 RNRRAHEGASRGKRL 617
A AS+G R+
Sbjct: 151 IVNLADSSASKGARI 165
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 772 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 599
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 598 RVSPPLT 578
R SP ++
Sbjct: 149 RASPTVS 155
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 706 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 611
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 727 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 626
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 601 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 717
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,735,738
Number of Sequences: 37544
Number of extensions: 537483
Number of successful extensions: 1809
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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