Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L24
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    55   1e-08
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.92 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   2.8  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   3.7  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.7  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    27   4.9  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   6.5  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
 Frame = +3

Query: 297 KRFYRGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEP--LARAVAVEWDSQNET-ISQ 467
           +RF++ TA    + +  + LD R LK+P+G ++ V  E   LA  +A+EWD    T + Q
Sbjct: 39  RRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSVRQ 98

Query: 468 ATMHLTALCNTALD-NPGKLTSHDIVN-YLLEYYPTDTLLFYSXXXXXXXXXXXXK---W 632
             + +T+L + A+D +  K    ++++  L+ +  TDT+L YS            +   W
Sbjct: 99  HNLPITSLVSRAIDISQFKKEEKELLSTQLIRFLDTDTILIYSPETEYEGKLLEEQKENW 158

Query: 633 TPILDWFQKTFNVK 674
            P+ + F+    V+
Sbjct: 159 WPLKETFENKLGVQ 172


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 285 IATRKRFYRGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETIS 464
           +A R+ FY   A IQ+D+   +       KT +       NE L    A E DSQ+ET+S
Sbjct: 110 LAIRRMFYSFCA-IQDDSNISIYAIGTSSKTDSSIQAASPNEDLKSEGAQEIDSQSETVS 168


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 375 TPNGNVLTVGNEPLARAVAVEWDSQNETISQATMHLTALCNTALDNPGKLTS 530
           T +  VL +    L R    +WD Q ETIS A   L  +C  A    G++ S
Sbjct: 687 TESRKVLNIPLNDLRRMFHQQWDKQRETISVAENDL-RICQKARKFFGEIES 737


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 387 NVLTVGNEPLARAVAVEWDSQNETI 461
           NVL V NEP A A+A   D +N+ I
Sbjct: 212 NVLRVVNEPTAAALAYGLDKKNDAI 236


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 180 QENNRTKQITQLHSAFPRY 124
           +EN +T+++T LHS   RY
Sbjct: 821 EENKKTEEVTNLHSQMSRY 839


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 405 NEPLARAVAVEWDSQNETISQATMHL-TALCNTALDN 512
           N+PLA AVA +    N  I +AT+HL  A+ N  L++
Sbjct: 350 NDPLAFAVAGKVSLANGQIDEATVHLIRAVSNGHLES 386


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 444 SQNETISQATMHLTALCNTALDNPGKLTSHDIV 542
           S+N+T + +++ +  L N A+D P   T  D+V
Sbjct: 612 SRNQTPTHSSIAVDTLSNVAVDQPAISTPSDVV 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,034
Number of Sequences: 5004
Number of extensions: 74108
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)