Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L24
         (917 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032126-1|AAH32126.1|  289|Homo sapiens ATP synthase mitochondr...   124   5e-28
BC004114-1|AAH04114.1|  289|Homo sapiens ATP synthase mitochondr...   124   5e-28
AK128275-1|BAC87363.1|  909|Homo sapiens protein ( Homo sapiens ...    35   0.36 

>BC032126-1|AAH32126.1|  289|Homo sapiens ATP synthase mitochondrial
           F1 complex assembly factor 2 protein.
          Length = 289

 Score =  124 bits (299), Expect = 5e-28
 Identities = 55/137 (40%), Positives = 81/137 (59%)
 Frame = +3

Query: 294 RKRFYRGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETISQAT 473
           RKRFY+  ++ Q +  +E+ LDHR+LKTP   + TV +E LA AVA EWDSQ +TI   T
Sbjct: 46  RKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYT 105

Query: 474 MHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXXKWTPILDWF 653
           MHLT LCNT+LDNP +     ++   +++  TDT+ +              +W PI++W 
Sbjct: 106 MHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWA 165

Query: 654 QKTFNVKQELANSIQPP 704
           +K + V+   + SI  P
Sbjct: 166 EKRYGVEISSSTSIMGP 182


>BC004114-1|AAH04114.1|  289|Homo sapiens ATP synthase mitochondrial
           F1 complex assembly factor 2 protein.
          Length = 289

 Score =  124 bits (299), Expect = 5e-28
 Identities = 55/137 (40%), Positives = 81/137 (59%)
 Frame = +3

Query: 294 RKRFYRGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETISQAT 473
           RKRFY+  ++ Q +  +E+ LDHR+LKTP   + TV +E LA AVA EWDSQ +TI   T
Sbjct: 46  RKRFYQNVSITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYT 105

Query: 474 MHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXXKWTPILDWF 653
           MHLT LCNT+LDNP +     ++   +++  TDT+ +              +W PI++W 
Sbjct: 106 MHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWA 165

Query: 654 QKTFNVKQELANSIQPP 704
           +K + V+   + SI  P
Sbjct: 166 EKRYGVEISSSTSIMGP 182


>AK128275-1|BAC87363.1|  909|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46412 fis, clone THYMU3011534. ).
          Length = 909

 Score = 35.1 bits (77), Expect = 0.36
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 342 WEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETI--SQATMHLTALCNTALDN 512
           W   LD+R L  P  ++LTV    ++ +VA++  S    I   +A +HL+  CNT   N
Sbjct: 74  WSCALDYRPLYLPIRSLLTVETFSVSSSVALDKSSSTLRIILDEAALHLSDKCNTVTIN 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,080,753
Number of Sequences: 237096
Number of extensions: 2535586
Number of successful extensions: 7590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7587
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)