Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L24
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical...    85   7e-17
U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    28   8.1  

>AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical
           protein Y116A8C.27 protein.
          Length = 269

 Score = 85.0 bits (201), Expect = 7e-17
 Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
 Frame = +3

Query: 297 KRFYRGTAVIQNDNK------WEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNET 458
           K+FY+  +VI   ++       +V LDHR LKT  G VL + + PLA A+A EW SQ+E 
Sbjct: 24  KKFYKEVSVINETDESTGNQIHKVLLDHRVLKTQGGQVLKLDSYPLALAIAEEWSSQDEF 83

Query: 459 ISQATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXXKWTP 638
           +    M LT L  TA DNP + T+  I   +L+Y   DT+LF++            KW P
Sbjct: 84  LQLGQMRLTGLAFTAQDNPLEQTADTISQKILDYVEGDTVLFFNTESSKLHRYQEEKWAP 143

Query: 639 ILDWFQKTFNVKQELANSI 695
           ++        +K   + +I
Sbjct: 144 LIKNLNNDLGIKVRPSENI 162


>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +3

Query: 339 KWEVTLDHRRLKTPNGNVLTVGNEPLARA-VAVEWDSQNETISQATMHLTALCNTALDNP 515
           K+  ++ + +LKT + N++  GN+PL R    +    +++     +M + A+  + L N 
Sbjct: 411 KFFESMANEQLKTEDDNLICWGNQPLRRFWHTLIGTEEHDDKGHGSMEMLAV--SLLKNA 468

Query: 516 GKLTSHDIVNYLLEYYP 566
            ++   DI+N+    +P
Sbjct: 469 REVPKKDIINFDQSVHP 485


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 223 QLINHHYYSFKPEETRK*QNKTNHATSLCVPTVPSVLQNLID 98
           + I  HY+  KP  T    N +N      +  +PS   +LID
Sbjct: 227 KFIKAHYFVTKPTNTNNTDNTSNTTQGSSISFIPSNTNSLID 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,619,283
Number of Sequences: 27780
Number of extensions: 416408
Number of successful extensions: 931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)