Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L24
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   3.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   6.8  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   6.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 538 LSITFWNIILQTHFYFILRMKKN*GIFKKENGHQY 642
           L +TF NI+   +  ++LR KK  G+ + +   +Y
Sbjct: 259 LELTFENILSHINTVYVLRTKK--GVMRVDASEEY 291


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 538 LSITFWNIILQTHFYFILRMKKN*GIFKKENGHQY 642
           L +TF NI+   +  ++LR KK  G+ + +   +Y
Sbjct: 259 LELTFENILSHINTVYVLRTKK--GVMRVDASEEY 291


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 466 CEIVSFCESHSTATARARGSFPTVNTFPFGVFRRR*SKVTS 344
           C   S C SH TA   + G+   +   P   F    +KV S
Sbjct: 114 CRNFSTCSSHPTAAFISYGTLFFIYVHPSATFSLDLNKVVS 154


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 466 CEIVSFCESHSTATARARGSFPTVNTFPFGVFRRR*SKVTS 344
           C   S C SH TA   + G+   +   P   F    +KV S
Sbjct: 113 CRNFSTCSSHPTAAFISYGTLFFIYVQPSATFSLDLNKVVS 153


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 378 PNGNVLTVGNE 410
           P+G V+T+GNE
Sbjct: 18  PDGQVITIGNE 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,754
Number of Sequences: 438
Number of extensions: 4880
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)