Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L23
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   9.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 823 PPPGXXPPXPPPXXXPPG 876
           PPPG  PP  PP   PPG
Sbjct: 14  PPPGFEPPSQPPPPPPPG 31



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 815 PXXPPXGXXPPXXPPXXPPP 874
           P  PP G  PP  PP  PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 823 PPPGXXPPXPPPXXXPP 873
           PP    PP PPP   PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 6   GLSITAXTYYGAFPFXDFKLLN 71
           GLS+    YYG FP    KLLN
Sbjct: 516 GLSVVGRDYYGVFPLRG-KLLN 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,307
Number of Sequences: 5004
Number of extensions: 9198
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)