Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L23
(969 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 32 0.53
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.0
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 5.0
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 8.7
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 32.3 bits (70), Expect = 0.53
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPP 873
PPPG PP PPP PP
Sbjct: 7 PPPGQQPPPPPPGQQPP 23
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPPG 876
PPPG PP PPP PPG
Sbjct: 763 PPPGGCPPPPPP--PPPG 778
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 14/57 (24%), Positives = 14/57 (24%)
Frame = +1
Query: 544 PPKKPXXPGFXXXXXXXXXXXXXXXFPPXXGXXPXXXXLSXXXPXPXPQPXXGXXXG 714
PP P G PP G P P P P P G G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPPG 876
PPPG PPP PPG
Sbjct: 775 PPPGGFKGGPPP-PPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPPG 876
PPPG PP PPP PPG
Sbjct: 763 PPPGGCPPPPPP--PPPG 778
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 14/57 (24%), Positives = 14/57 (24%)
Frame = +1
Query: 544 PPKKPXXPGFXXXXXXXXXXXXXXXFPPXXGXXPXXXXLSXXXPXPXPQPXXGXXXG 714
PP P G PP G P P P P P G G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPPG 876
PPPG PPP PPG
Sbjct: 775 PPPGGFKGGPPP-PPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPPG 876
PPPG PP PPP PPG
Sbjct: 346 PPPGGCPPPPPP--PPPG 361
Score = 24.2 bits (50), Expect(2) = 3.2
Identities = 14/57 (24%), Positives = 14/57 (24%)
Frame = +1
Query: 544 PPKKPXXPGFXXXXXXXXXXXXXXXFPPXXGXXPXXXXLSXXXPXPXPQPXXGXXXG 714
PP P G PP G P P P P P G G
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
Score = 23.8 bits (49), Expect(2) = 3.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPPG 876
PPPG PPP PPG
Sbjct: 358 PPPGGFKGGPPP-PPPPG 374
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPP 873
PP G PP PPP PP
Sbjct: 232 PPAGSPPPPPPPKGSPP 248
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPP 873
PP G PP PPP PP
Sbjct: 253 PPAGSPPPPPPPKGSPP 269
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPP 873
PP G PP PPP PP
Sbjct: 238 PPAGSPPPPPPPKGSPP 254
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 882 GXXGGGXXGGXXGGXXPXGGXXG 814
G GGG GG GG P GG G
Sbjct: 209 GMGGGGYGGGGDGGYGPSGGYGG 231
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 823 PPPGXXPPXPPPXXXPP 873
PPP PP PPP PP
Sbjct: 67 PPPICPPPPPPPMPCPP 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,918
Number of Sequences: 27780
Number of extensions: 130545
Number of successful extensions: 1724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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