Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L22
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    50   6e-07
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    39   0.001
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    26   8.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   8.3  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   8.3  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +2

Query: 473 IEPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGEN 646
           +E DK+IGL+D D+ GPS+P +M +  E          P+ +   +  MS+G LL S ++
Sbjct: 87  LEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIYVCPNLAVMSIGFLLPSEDS 146

Query: 647 AVXWRGLMVMQALERLTRHVAWGXL 721
           +V WRG      +++  + V W  L
Sbjct: 147 SVIWRGPKKNGLIKQFIKDVNWENL 171



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = +1

Query: 715 SLDCLVVXTPPGXGDTHLSLAQ---NXPLDGAIVVXPP 819
           +LD L+V TPPG  D HLSL Q   N  +DGA+VV  P
Sbjct: 170 NLDYLIVDTPPGTSDEHLSLVQFFKNSGIDGAVVVTTP 207


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 10/46 (21%)
 Frame = +1

Query: 712 GSLDCLVVXTPPGXGDTHLSLAQ----------NXPLDGAIVVXPP 819
           G LD L++ TPPG GD HL++ +          + P+DGA++V  P
Sbjct: 122 GELDFLIIDTPPGTGDEHLTIVESLLSETSTVRDVPIDGAVIVTTP 167



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
 Frame = +2

Query: 467 KVIEPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIE----PLLNYGVK---CMSMG 625
           KV     + G+LD D+ GPS+P M     E   N  H       P+     K    MS+G
Sbjct: 34  KVYSRPLKTGILDIDLTGPSIPRMFGKDAE--RNRIHQSSAGWVPVYTDETKEIGLMSLG 91

Query: 626 LLVSGEN-AVXWRGLMVMQALERLTRHVAWGXL 721
            L++ +N +V WRG      + +    V+WG L
Sbjct: 92  FLLTSKNDSVVWRGPKKAAMIRQFISDVSWGEL 124


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 337 AKVMSKGLPEKKPLPG-VKSIILVA--SGERRCWK 432
           AK++ KG P  KPL G V  +  +A   G R  W+
Sbjct: 69  AKILGKGRPAPKPLGGPVSGLYQIARHEGVRSLWR 103


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 687 SSACITIKPRHXTAFSPDTNRPIDIHL--TP*LSK 589
           S++ +++ P   TA S  TN P+D H   TP +S+
Sbjct: 296 SASQVSLSPMASTASSSVTNSPVDTHTPSTPIMSR 330


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 256 VQYQDEHAPCLQTVR-FNHSKSDIMDHRAKVMSKGLPEKKPLP 381
           ++YQD   PC+ T++ F+ ++S  +  +  V SK +P K  LP
Sbjct: 25  IEYQDSQEPCICTIQLFSGNESGSLMQKCFV-SK-IPNKSLLP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,243
Number of Sequences: 5004
Number of extensions: 64451
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)