Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L22
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 103 2e-22
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 51 1e-06
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 50 2e-06
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 48 1e-05
04_04_0976 + 29839697-29840350 33 0.40
08_01_0172 - 1460071-1460740,1460857-1461818 29 5.0
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 29 6.6
06_03_0399 - 20403488-20405092 28 8.7
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 28 8.7
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 103 bits (247), Expect = 2e-22
Identities = 47/95 (49%), Positives = 69/95 (72%)
Frame = +2
Query: 443 AVNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPLLNYGVKCMSM 622
AVN+A A+ + ++GLLDAD++GPS+P MMN+ +P +++D + P+ NYGV+CMS+
Sbjct: 49 AVNIAVALAK-KFQLKVGLLDADIYGPSIPTMMNLHAKPEVSEDMRMIPVDNYGVQCMSI 107
Query: 623 GLLVSGENAVXWRGLMVMQALERLTRHVAWGXLTV 727
G LV + + WRG MVM ALE++TR VAWG L +
Sbjct: 108 GFLVDKDAPIVWRGPMVMSALEKITRGVAWGNLDI 142
Score = 39.1 bits (87), Expect = 0.005
Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 700 TRGV--GSLDCLVVXTPPGXGDTHLSLAQNXPLDG 798
TRGV G+LD LVV PPG GD LS++Q L G
Sbjct: 132 TRGVAWGNLDILVVDMPPGTGDAQLSMSQRLRLSG 166
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +2
Query: 476 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGENA 649
E D ++GLLD D+ GPS+P M+ + G+ + + P+ + + MS+G +L + ++A
Sbjct: 92 EMDHQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDA 151
Query: 650 VXWRGLMVMQALERLTRHVAWGXL 721
V WRG +++ + V WG +
Sbjct: 152 VIWRGPRKNGLIKQFLKDVDWGEI 175
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 712 GSLDCLVVXTPPGXGDTHLSLAQNXP---LDGAIVVXPP 819
G +D LVV PPG D H+S+ Q +DGAI+V P
Sbjct: 173 GEIDYLVVDAPPGTSDEHISIVQYLQIAGIDGAIIVTTP 211
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +2
Query: 476 EPDKEIGLLDADVFGPSVPLMMNISGEPMLNDDHLIEPL-LNYGVKCMSMG-LLVSGENA 649
E D ++GLLD D+ GPS+P M+ + G+ + + P+ + + MS+G +L + ++A
Sbjct: 96 EMDCQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDA 155
Query: 650 VXWRGLMVMQALERLTRHVAWGXL 721
V WRG +++ + V WG +
Sbjct: 156 VIWRGPRKNGLIKQFLKDVDWGEI 179
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 712 GSLDCLVVXTPPGXGDTHLSLAQNXP---LDGAIVVXPP 819
G +D LVV PPG D H+S+ Q +DGAI+V P
Sbjct: 177 GEIDYLVVDAPPGTSDEHISIVQYLQATGIDGAIIVTTP 215
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 443 AVNLACAMKVIEPDKEIGLLDADVFGPSVPLMMNISGE--PMLNDDHLIEPLLNYGVKCM 616
AVNLA + + +G+ DADVFGPS+P M++ M + I P GVK +
Sbjct: 156 AVNLAYTLAGM--GARVGIFDADVFGPSLPTMVSPENRLLVMNPESRSILPTEYLGVKMV 213
Query: 617 SMGLLVSGENAVXWRGLMVMQALERLTRHVAWGXL 721
S G +G+ RG MV + +L WG L
Sbjct: 214 SFGF--AGQGRAIMRGPMVSGVINQLLTTTDWGEL 246
Score = 39.9 bits (89), Expect = 0.003
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 712 GSLDCLVVXTPPGXGDTHLSLAQ-NXPLDGAIVVXPP 819
G LD LV+ PPG GD HL+L Q PL A++V P
Sbjct: 244 GELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVTTP 280
>04_04_0976 + 29839697-29840350
Length = 217
Score = 32.7 bits (71), Expect = 0.40
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 400 LVASGERRCWKNYHSCKPSMCYESNRTGQGNR 495
++A+ RRCW+ PS C +S R+ QG R
Sbjct: 168 ILATTRRRCWQRRRPPPPSRCGKSYRSSQGRR 199
>08_01_0172 - 1460071-1460740,1460857-1461818
Length = 543
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 788 GXFCAS-DKCVSPXPGGVXTTRQSXDPTPRVASDVPV--LASPLSRATXQHSRQT 633
G +CA D+C P QS P P + + +PV P++ + QHS T
Sbjct: 474 GLWCAHPDRCARPSIRVAMAVLQSNGPLPMLPTKMPVPTYGPPVASSEGQHSSST 528
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 809 TTIAPSKGXFCASDKCVSPXPGGVXTTRQSXDPTPRVASDVPV 681
TT P CAS + S R++ +P PRV+S + V
Sbjct: 243 TTSTPRSAPRCASARAASRRSSAAPARRRASEPRPRVSSAMRV 285
>06_03_0399 - 20403488-20405092
Length = 534
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 676 ASTGTSDATRGVGSLDCLVVXTPPGXGDTHLSLAQNXPLDGAI 804
A+ + A + G LDCL P G TH S + L+ +I
Sbjct: 25 AAAAAAPANQTAGFLDCLAASLPAGVVYTHASRSYQSVLESSI 67
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 761 VSPXPGGVXTTRQSXDPTPRVASDVPVLASPLSRAT 654
V P PG V ++Q P+P S V L PL + T
Sbjct: 163 VPPSPGTVFPSQQPMQPSPMTTSTVFPLQQPLPQPT 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,299,572
Number of Sequences: 37544
Number of extensions: 409942
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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