Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L21
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 238 9e-64
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 1.6
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 28 2.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 6.5
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 6.5
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 8.6
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 8.6
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 238 bits (582), Expect = 9e-64
Identities = 107/159 (67%), Positives = 135/159 (84%), Gaps = 1/159 (0%)
Frame = +3
Query: 195 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 374
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 375 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 554
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 555 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEF-WV 668
MFGYATDET E +PLT++LAHKLN ++ RR+G W+
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWL 163
Score = 62.1 bits (144), Expect = 1e-10
Identities = 31/66 (46%), Positives = 44/66 (66%)
Frame = +1
Query: 667 WARPDSKTQVTCEYVFAGGATVPQRVHTVXVSLQHSEKITLKXLPRMKIXEKVXKKGYPC 846
W RPD+KTQVT EY GA +P+RV T+ VS QH++ I+ + L R +I EK+ K P
Sbjct: 162 WLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDL-RSEILEKIIKPTVPA 220
Query: 847 XNILNE 864
++L+E
Sbjct: 221 -HLLDE 225
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.17
Identities = 40/144 (27%), Positives = 65/144 (45%)
Frame = -2
Query: 610 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 431
S++ + SVSS + +P TSSS+L S + + SS+S TL S L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235
Query: 430 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 251
SS P + S +T S + S S+ ++S ++ +S S +S I+S
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292
Query: 250 WSHILSG*PSPTDSDVNKNTDPSS 179
S S P+ T S ++ ++ SS
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 750 SMNSLWDCCTTSKYIFASNLCF*IWSCPPKIL 655
S +SL D TT ++IF+ NL +W P L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTL 275
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 2.1
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +3
Query: 99 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 275
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692
Query: 276 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 374
K E L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 245 RPNKRRYSRRAPESGSGRKSCM 310
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 231 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 335
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 467 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 342
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 363 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 482
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,611,159
Number of Sequences: 5004
Number of extensions: 78807
Number of successful extensions: 245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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