Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L21
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 211 5e-55
01_02_0051 - 10655867-10657057 210 2e-54
01_03_0090 - 12347165-12348349 208 6e-54
12_02_0655 + 21588662-21589051 31 1.3
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 1.7
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 3.9
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 29 5.2
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 6.8
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 28 9.0
06_03_1153 - 28047125-28047751 28 9.0
>05_01_0264 + 2030080-2031270
Length = 396
Score = 211 bits (516), Expect = 5e-55
Identities = 98/156 (62%), Positives = 125/156 (80%), Gaps = 2/156 (1%)
Frame = +3
Query: 195 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 374
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 375 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 548
DY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 549 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNG 656
G MFGYATDET E MPL+ VLA KL ++ E+R+NG
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNG 162
Score = 56.4 bits (130), Expect = 3e-08
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = +1
Query: 667 WARPDSKTQVTCEYVFAGGATVPQRVHTVXVSLQHSEKIT 786
W RPD KTQVT EY GA VP RVHTV +S QH E +T
Sbjct: 166 WLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQHDETVT 205
>01_02_0051 - 10655867-10657057
Length = 396
Score = 210 bits (512), Expect = 2e-54
Identities = 98/162 (60%), Positives = 127/162 (78%), Gaps = 2/162 (1%)
Frame = +3
Query: 177 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEI 356
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT MV++ GEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 357 TSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEE 530
T+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 531 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNG 656
+GAGDQG MFGYATDET E MPL+ VLA KL ++ E+R+NG
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNG 162
Score = 56.4 bits (130), Expect = 3e-08
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = +1
Query: 667 WARPDSKTQVTCEYVFAGGATVPQRVHTVXVSLQHSEKIT 786
W RPD KTQVT EY GA VP RVHTV +S QH E +T
Sbjct: 166 WLRPDGKTQVTVEYQNDNGAMVPLRVHTVLISTQHDETVT 205
>01_03_0090 - 12347165-12348349
Length = 394
Score = 208 bits (507), Expect = 6e-54
Identities = 97/156 (62%), Positives = 122/156 (78%), Gaps = 2/156 (1%)
Frame = +3
Query: 195 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 374
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 375 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 548
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 549 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNG 656
G MFGYATDET E MPL+ VLA KL ++ E+R+NG
Sbjct: 126 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNG 161
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = +1
Query: 667 WARPDSKTQVTCEYVFAGGATVPQRVHTVXVSLQHSEKIT 786
W RPD KTQVT EY+ GA VP RVHTV +S QH E +T
Sbjct: 165 WLRPDGKTQVTVEYLNDAGAMVPVRVHTVLISTQHDETVT 204
>12_02_0655 + 21588662-21589051
Length = 129
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 143 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPESGSGRK 301
WI QR ++ G W RGS V P +RR SRR P SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 303 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 464
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 180 EDGSVFLFTSESVGEGHPDKM---CDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 347
+DGS +LFTS+ E HP M D+ S+ IL E I K G L C
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRC 823
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 29.1 bits (62), Expect = 5.2
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +3
Query: 492 IAAGVHENRNDEEVGAGDQGLMFGY----ATDETEECMPLTVVLAHKLNQKIAELRRNGE 659
I G H DEE AG+ GL G ++E E T+V K +K R G
Sbjct: 130 IGLGFHGEEEDEEEEAGEAGLHLGLGFRGCSNEEVELEEATLVTPRKPKEKPKGKRNEGF 189
Query: 660 FWVGKTR 680
+G R
Sbjct: 190 LSIGGIR 196
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 303 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 464
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 719 PANTYSQVTCVFESGLAHPKFSISPELCNF 630
P + Y+ +T V E G PKF +PE+ F
Sbjct: 307 PKDDYAVITAVTELGHGKPKFYSTPEVIEF 336
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 197 FVHIGICWRG-SSRQNVRPNKRRYSRRAPESGSGRKSCM*NHN*NRYGA 340
+++ CW+ ++ P Y R P +G GR +H+ + YGA
Sbjct: 106 YIYRSQCWKSLKKKKKPPPPLPLYRPRPPPAGDGRPDVTVHHHHHHYGA 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,585,141
Number of Sequences: 37544
Number of extensions: 526328
Number of successful extensions: 1403
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -