Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L18
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179           31   0.96 
05_04_0259 + 19494629-19495394,19495408-19495949                       30   2.9  
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368...    29   3.9  
02_04_0491 + 23417790-23417859,23418550-23418773,23418951-234189...    28   8.9  

>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
          Length = 312

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 714 SSNTPPRRERIHVPKLSTLLRSVL***C-SPRPGACTSRWAMTSRVPR*RKDPGHYGASC 538
           S + PP R   HVP  STLL       C +PRP +C   +A      +    P   G   
Sbjct: 9   SPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCFHSYAAGEGYEQLDPMPETAGVEV 68

Query: 537 LGSVARQCERSQEW 496
            G +A   E ++ +
Sbjct: 69  FGLIAAFMEAAENF 82


>05_04_0259 + 19494629-19495394,19495408-19495949
          Length = 435

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 168 FRAVMQGSQHVGKGVHTSSVTTE-KNVCYAPFGALQPRATKEGRIKCTLIPGDGVGPE 338
           +   M GS   G  V T  +  + K V +  FGA    ATK+G + C  +   GV PE
Sbjct: 336 YDGTMVGSTRAGPAVPTVELVLQSKAVSWVVFGANSMVATKDGAL-CFGVVDGGVAPE 392


>02_01_0507 -
           3682383-3682703,3682830-3682970,3683071-3683147,
           3683835-3683901
          Length = 201

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 593 IAQREVQAPGRGLHHHQRTDRRRVLSFG 676
           +A R V A G G H HQR  RR+ L  G
Sbjct: 91  LATRTVPAAGIGSHSHQRPHRRQALHAG 118


>02_04_0491 +
           23417790-23417859,23418550-23418773,23418951-23418964,
           23419842-23419968,23420092-23420161,23420661-23420766,
           23420849-23420966,23421457-23421576,23421679-23421859,
           23421954-23422030,23422117-23422169,23422336-23422387,
           23422683-23423885
          Length = 804

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 623 RGLHHHQRTDRRRVLSFGT*IRSRRGGVFEDHHRSEIRAYCEIRFRL 763
           +GL H        +LS      +   GV++ H  +E+ +YC  RF +
Sbjct: 136 QGLGHKMEDAHAAILSLDDTTSTSFFGVYDGHGGAEVASYCAKRFHI 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,946,963
Number of Sequences: 37544
Number of extensions: 563174
Number of successful extensions: 1341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)