Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L16
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 34 0.032
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 3.7
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 27 3.7
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.7
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 3.7
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 8.5
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 8.5
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 8.5
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 8.5
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 33.9 bits (74), Expect = 0.032
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +1
Query: 592 RNTKARRVCIATSPLNISEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYELS 771
+N+K+R V + +SP N+ ++S + KKK VP + ++D S + S ++
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKKGNVP-NAIETDSSPSDTISSSPTVRAVN 619
Query: 772 LYISTPSK 795
L +PSK
Sbjct: 620 L---SPSK 624
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 661 KQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYELSLYISTPSKTCCTSDY 816
+ EP +KK+ D+FD +E + + D+E L +S+P+ + Y
Sbjct: 1398 EDEEPKRKKS--KSDRFDDEEKDLDEIPSTAADFERQL-LSSPNSSLLWISY 1446
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 619 IATSPLNISEASI--SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 765
I LN +SI K +P K K ++P+ +FD D TE +E
Sbjct: 36 ITNLSLNSDTSSILFDKNKKPLKPKIIIPDKEFDLDYYLKDETESIQSPFE 86
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +1
Query: 619 IATSPLNISEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGS-TVDYELSLYI--STP 789
I S L+I+E Q+ P + V+P++ SDE N + TV + ++ +TP
Sbjct: 219 IPYSSLSIAERIKQAQNTPFLESKVLPQNNETSDEENVDVKPAAGTVKNVMQAFLQPATP 278
Query: 790 SKTCCTSDYS 819
+K + + S
Sbjct: 279 AKDTASKEPS 288
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 3.7
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 592 RNTKARRVCIATSPLNISEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYELS 771
+N AR + N+ E S SKQS P+K T P K ++ S ++ + +S
Sbjct: 74 KNPVARDIFARLDLENMFEES-SKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLS-NVS 131
Query: 772 LYISTPSKTCCTS-DYSSQ 825
S+PSK S DY +
Sbjct: 132 NMQSSPSKDPFVSQDYEKE 150
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 350 HSNSFDGAHYLVLHIILHVVFQLCEL 273
HSN+ + A Y+V+H +L V+F + L
Sbjct: 700 HSNNINDA-YVVIHTLLKVIFSVVPL 724
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 554 PIFKWLDSLTTRCQRYNNTTHLIFSRLF-NFLD 459
PI + L+ L T C +TH +F ++F FL+
Sbjct: 340 PILQKLNELITYCAHDTYSTHQVFKKVFPQFLE 372
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -2
Query: 662 LLILASDILRGDVAIHTRLAFVFLCWSYLDSFV---ITTPIFKWLDSLTTRCQRYNN 501
L+ L D R V I R LC+S +DS+V I + L + TR Q N
Sbjct: 420 LVPLYVDSSRVKVPIDIRNEMAALCFSQIDSYVRFSILCSLLALLHQIATRTQELEN 476
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 589 HRNTKARRVCIATSPLNISEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDY 762
++NT++ ++ + I S +S A V+P ++D++N + ST DY
Sbjct: 37 NKNTRSYPYSVSRNYSFILNKSNRSKSTAASPPYVIPSTSSNADDANKEPEKQSTSDY 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,647
Number of Sequences: 5004
Number of extensions: 68151
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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