Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L16
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-6|AAB94190.1| 389|Caenorhabditis elegans Hypothetical ... 30 2.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical ... 29 3.5
AC006795-4|AAK84612.2| 430|Caenorhabditis elegans Hypothetical ... 29 4.6
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 6.1
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 29 6.1
>AF039041-6|AAB94190.1| 389|Caenorhabditis elegans Hypothetical
protein W03F8.3 protein.
Length = 389
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 601 KARRVCIATSPLNISEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVD 759
+ +RV + S ++ S ASIS EP + VVP D + A G V+
Sbjct: 210 RVQRVPVNDSRMHTSTASISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVN 262
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +1
Query: 565 TKLSK*LQHRNTKARRVCIATSPLNISEASISKQSEPAKKKTVVPEDKFDSDESNAPATE 744
+K SK + R+ K+++ TS + E I QS P + T D S + +T
Sbjct: 671 SKASKSSRKRSKKSKK-SNETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTS 729
Query: 745 GSTVDYELSLYISTPSKT 798
S+ + +STP K+
Sbjct: 730 ESSSSAPSAEQVSTPKKS 747
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 601 KARRVCIATSPLNISEASISKQSEPAKKKTVVPEDKFDSDE 723
K RR A P NIS++S SK ++K ++K SDE
Sbjct: 392 KLRRGDTAGGPQNISDSSSSKLPSRYRQKLPTEQEKISSDE 432
>AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical
protein W02F12.3 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 583 LQHRNTKARRVCIATSPLNISEASISKQ--SEPAKKKTVVPEDKFDSDESNAPATEG 747
LQH+N +T P S + SEP + PED D D+SN P+T G
Sbjct: 267 LQHQNAVGSGDTPSTRPSTAENNSDHGEGPSEPQNRPPSRPED--DDDDSNKPSTSG 321
>AC006795-4|AAK84612.2| 430|Caenorhabditis elegans Hypothetical
protein Y50D4B.4 protein.
Length = 430
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 628 SPLNISEASISKQSEPAKKKTVV 696
SPL++ E +IS+Q P+KK T +
Sbjct: 9 SPLSLGETNISQQKHPSKKSTAL 31
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = -2
Query: 635 RGDVAIHTRL-AFVFLCWSYLDSFVITTPIFKWLDSLTTRCQRYNNTTHLIFSRLFNFLD 459
+G+V H + A + C + + S V+ F L +L R HL++ R L
Sbjct: 113 QGEVKSHGNMKAAISDCGALMGSIVMEDH-FLVLQTLPKRVHHLQKERHLVYKRSAGLLT 171
Query: 458 NSESLPFHKCRPRFT-MSEFSFSICPTIE 375
N+ES K R T + E S C T E
Sbjct: 172 NAES----KIREEITRLQEEQESFCDTSE 196
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = -2
Query: 635 RGDVAIHTRL-AFVFLCWSYLDSFVITTPIFKWLDSLTTRCQRYNNTTHLIFSRLFNFLD 459
+G+V H + A + C + + S V+ F L +L R HL++ R L
Sbjct: 113 QGEVKSHGNMKAAISDCGALMGSIVMEDH-FLVLQTLPKRVHHLQKERHLVYKRSAGLLT 171
Query: 458 NSESLPFHKCRPRFT-MSEFSFSICPTIE 375
N+ES K R T + E S C T E
Sbjct: 172 NAES----KIREEITRLQEEQESFCDTSE 196
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = -2
Query: 635 RGDVAIHTRL-AFVFLCWSYLDSFVITTPIFKWLDSLTTRCQRYNNTTHLIFSRLFNFLD 459
+G+V H + A + C + + S V+ F L +L R HL++ R L
Sbjct: 113 QGEVKSHGNMKAAISDCGALMGSIVMEDH-FLVLQTLPKRVHHLQKERHLVYKRSAGLLT 171
Query: 458 NSESLPFHKCRPRFT-MSEFSFSICPTIE 375
N+ES K R T + E S C T E
Sbjct: 172 NAES----KIREEITRLQEEQESFCDTSE 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,576
Number of Sequences: 27780
Number of extensions: 372597
Number of successful extensions: 1000
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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