Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L12
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 3.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.7
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 27 3.7
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.9
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 27 4.9
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 6.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.6
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 8.6
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 527 SPPSTETVAASHEYNYVPKNGSTELRQETSRGVGVL 420
+PP+ +T +S YN VP+N ST ++ + + V+
Sbjct: 50 TPPAFKTPYSSLPYNLVPQNSSTSKKRPRAEDLLVI 85
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 3.7
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = -2
Query: 587 VLHSPADLHDA-VPGCSGAHASPPSTETVAASHEYNYVPKNGSTELRQETSRGVGVLLFL 411
+L DL + + GC G H + + V+ + + +G TEL + FL
Sbjct: 192 ILSEKEDLIELDISGCEGFHNADTLSRLVSRNRGLKELSMDGCTELSH-------FITFL 244
Query: 410 HTARSRR*LMQQTSKSRIQAVMTASMRMITLIFSRSTSCHLSKARGFIPILILS 249
+ M+ S + + + + + +IT FS+ S LSK G +LS
Sbjct: 245 NL-NCELDAMRALSLNNLPDLKDSDIELITCKFSKLNSLFLSKCIGLTDSSLLS 297
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 30 GXSLXLYNCWLFFVRGVRVCGSC*NM 107
G + LY C FF+ G +CG+ NM
Sbjct: 159 GRKIVLYICIFFFMLGSALCGASQNM 184
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 807 RSSTSGVQTARTAGVPLPTSSVHTARTGRVPLPA 908
+ +G + PLP SVH T P+PA
Sbjct: 104 KEDPNGASSKTVKARPLPAGSVHRVTTHMAPIPA 137
>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 147 TINENC*N*HKSQTCFNKNRTHERHAQKRANNCKVLRN 34
T EN K TC N++ H++ + N+ KVLR+
Sbjct: 5 TAKENVPTNQKLDTCKNQSTVHQKVNKSLGNSNKVLRS 42
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = -2
Query: 311 SRSTSCHLSKARGFIPILILSTRSEVVNKNK*ITQNWPNYIS----XXXXXXXXXXXXXX 144
SRS+S H K+ + ++++ E ++ + Q+ PN S
Sbjct: 156 SRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAPSTRQRDL 215
Query: 143 LTKTVKINTSPK-HVSTRTAHTNATHKKEPTIV 48
+ + + SP+ VS+ + TNAT++ P+ V
Sbjct: 216 KSSILSLYASPRPQVSSSSITTNATYQNLPSPV 248
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 723 SSESAPCSSRRAQSRAACTCCSRADACARSS---TSGVQTARTAGVPLPTSSVHTART 887
SS+S+ SS R+ S ++ + S + + + SS TS Q+ T+G TSSV T
Sbjct: 530 SSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTST 587
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 593 PAVLHSPADLHDAVPGCSGAHASPPSTETVAASHEYNYVPKNGSTELRQET 441
PAV SP +P S HA PP + + A +N V S R+++
Sbjct: 1359 PAVPTSPKP---QIPDSSNVHAPPPPVQPMNAMPSHNAVNARPSAPERRDS 1406
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 575 PADLHDAVPGCSGAHASPPSTETVAASHEYNYVP 474
P D AV C GA A S + ++++Y+ VP
Sbjct: 35 PVDFMFAVAPCGGAIAITRSESNLQSNYKYDQVP 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,008
Number of Sequences: 5004
Number of extensions: 67568
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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