Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L12
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0892 - 25713502-25714125,25714309-25715199 35 0.10
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 32 0.73
10_07_0196 + 13978647-13979142,13979242-13980542 31 1.3
10_06_0145 + 11215895-11216860 31 1.3
04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163... 31 1.7
02_05_1353 + 35866130-35866297,35866438-35868762 30 2.9
10_08_0563 - 18811520-18811804 29 3.9
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670... 29 3.9
01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770... 29 3.9
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221... 29 6.8
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 29 6.8
01_04_0062 - 15563978-15564616,15564687-15565604 29 6.8
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 28 9.0
01_06_1475 + 37634831-37636297 28 9.0
>06_03_0892 - 25713502-25714125,25714309-25715199
Length = 504
Score = 34.7 bits (76), Expect = 0.10
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -3
Query: 904 GSGTRPVRAVCTLEVGSG--TPAVRAVCTPEVDERAQASAREQHVQAARLCALLLEHGAD 731
G R +R +CT+E+ SG + R V E +A A QA L LL H AD
Sbjct: 126 GDRWRELRKICTVELLSGRRVQSFRPVREEEAGRLLRAVAAASPGQAVNLSELLSAHAAD 185
Query: 730 SLLTLHIGD 704
S + +GD
Sbjct: 186 SSVRAIMGD 194
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 31.9 bits (69), Expect = 0.73
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -3
Query: 865 EVGSGTPAVRAVCTPEVDERAQASAREQHVQAARLCALLLEHG 737
EVG G PAVR + +V E ++A+E A R+ A+LLE+G
Sbjct: 504 EVG-GAPAVRRMKVKDVSEYMISAAKENPQIAERIHAVLLENG 545
>10_07_0196 + 13978647-13979142,13979242-13980542
Length = 598
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 702 LSPMCKVSSESAPCSSRRAQSRAACTCCSRADACARSSTSGVQTARTAG 848
L C V++ +RR++SR C+CCS AR++ +TA +G
Sbjct: 103 LCKRCTVATNDV-VDTRRSKSRQLCSCCSEPFTKARNAHRISETASVSG 150
>10_06_0145 + 11215895-11216860
Length = 321
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 780 CCSRADACARSSTSGVQTARTAGVPLPTSSVHTARTGRVPLPAP 911
CCS ++A ++ + T P PTSS + A T P P P
Sbjct: 238 CCSVSEASTTTTADAADVSSTGSSPSPTSS-NQAATATPPAPRP 280
>04_01_0141 +
1631649-1631727,1633607-1633651,1633841-1634454,
1634569-1634627,1634721-1634911,1636739-1637073
Length = 440
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 502 ATVSVEGGDACAPEHPGTASCKSAGECSTAGQ--QMDDVMN 618
AT +V GG CA A C S G CSTAGQ MDD ++
Sbjct: 132 ATGTVRGGAPCARVAMYKA-CWSGGGCSTAGQLKAMDDAVH 171
>02_05_1353 + 35866130-35866297,35866438-35868762
Length = 830
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +1
Query: 4 VFPYCXPTTGIP*XFTIVGSFLCVAFVCAVLVETCLGLV 120
V P C G F VGSF + F AV T LG V
Sbjct: 321 VMPLCFGAIGARLDFAAVGSFTAMQFAVAVAFTTLLGAV 359
>10_08_0563 - 18811520-18811804
Length = 94
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 726 SESAPCSSRRAQSRAACTCCSRAD---ACARSSTSGVQTARTAGVPLPT 863
SES CS+ RAQ + C C D A ++T+ +T G+P+P+
Sbjct: 46 SESC-CSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAACGIPIPS 93
>10_08_0309 +
16666047-16666543,16666626-16666836,16666925-16667035,
16667130-16667918
Length = 535
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 693 RRALSPMCKVSSESAPCSSRRAQSRAACTCCSRADACARSSTSGVQTARTAGVPL 857
RRA S + SS S+ +S R + +AAC + A AR + ++R GVP+
Sbjct: 22 RRAASVVAMPSSSSSATTSLRMKRQAACEPVA-CRAVARHVAAAAASSRRNGVPV 75
>01_07_0099 -
41076056-41076059,41076135-41076175,41076937-41077041,
41077476-41077552,41078773-41078944,41079099-41079194,
41080268-41080465
Length = 230
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/52 (40%), Positives = 24/52 (46%)
Frame = +3
Query: 756 AQSRAACTCCSRADACARSSTSGVQTARTAGVPLPTSSVHTARTGRVPLPAP 911
A+S+A SRADA A +GVQ RT LP A P PAP
Sbjct: 7 ARSKALALALSRADAAAPGPAAGVQWLRTLS-SLPRDPAAAAS----PAPAP 53
>11_01_0295 +
2217496-2218092,2218774-2218876,2219140-2219249,
2219328-2219399,2219653-2219814,2220300-2220510,
2220613-2220948,2221050-2221162
Length = 567
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 575 PADLHDAVPGCSGAHASPPSTE 510
PADL D + G G+H P ST+
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTD 142
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 865 EVGSGTPAVRAVCTPEVDERAQASAREQHVQAARLCALLLEHG 737
EVGS TPAVR + ++ E +A+E A ++ +LLE+G
Sbjct: 535 EVGS-TPAVRRMKVKDISEYMINAAKENPQLAQKIHEVLLENG 576
>01_04_0062 - 15563978-15564616,15564687-15565604
Length = 518
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -3
Query: 904 GSGTRPVRAVCTLEVGSG--TPAVRAVCTPEVDERAQASAREQHVQAARLCALLLEHGAD 731
G G R +R +CTLE+ S + RAV EV +A A V A
Sbjct: 127 GDGWRTLRRICTLELLSARRVRSFRAVREEEVGRLLRAVAAAAAVAALTTPGATAAVNLS 186
Query: 730 SLLTLHIGDNALR 692
++ ++ D+A+R
Sbjct: 187 ERISAYVADSAVR 199
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 750 RRAQSRAACTCCSRADACARSSTSGVQTARTAGVPLPTSS 869
R +Q RAA + + A A+ S G TA P PTSS
Sbjct: 384 RCSQERAAAAAAAASAAAAQRSGGGDDEDATAAPPPPTSS 423
>01_06_1475 + 37634831-37636297
Length = 488
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +3
Query: 654 LTMEAPFVWFVHKRRA-LSPMCKVSSESAPCSSRRAQSRAACTCCSRADACARSSTSGVQ 830
L + + VW A +P+ + PC+ Q A TC + A CA + G
Sbjct: 117 LDISSDLVWTACGATAPFNPVRSTTVADVPCTDDACQQFAPQTCGAGASECAYTYMYGGG 176
Query: 831 TARTAGV 851
A T G+
Sbjct: 177 AANTTGL 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,553,302
Number of Sequences: 37544
Number of extensions: 502253
Number of successful extensions: 1826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -