Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L12
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -2

Query: 644 STCNAPIILFITSSIC*PAVLHSPADL-HDAVPGCSGAHASPPSTETVAASHEYNYVP 474
           S  NA +   + SS    +++ SP    H  + GC+G H +      +     YN +P
Sbjct: 375 SKFNAAVAAAVQSS----SIVSSPDSARHQRIGGCNGLHTTTAHNRFLGGIGGYNGLP 428


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 720 VSSESAPCSSRRAQSRAACTCCSRADAC 803
           +S+ S PC     + +   TCC   D C
Sbjct: 446 ISACSLPCEPGMIKKQQGDTCCWVCDQC 473


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 720 VSSESAPCSSRRAQSRAACTCCSRADAC 803
           +S+ S PC     + +   TCC   D C
Sbjct: 536 ISACSLPCEPGMIKKQQGDTCCWVCDQC 563


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 813 STSGVQTARTAGVPLPTSSVHTARTGRVPLP 905
           S +G Q   +AG P+P     +  +G  PLP
Sbjct: 403 SPAGGQLPPSAGAPMPPIPNMSNMSGMPPLP 433


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 717 KVSSESAPC-SSRRAQSRAACTCCSRADACARSSTSGVQTARTAGVPLPTSSVHTARTGR 893
           K ++ + P  SSR+ Q ++     +  D C  +  S V T  T  +  PT+SV +     
Sbjct: 796 KTATTTQPVISSRKEQKKSEEKNIN--DHCVTTEQSVVVTNVTTTINTPTTSVISMSGTT 853

Query: 894 VPL 902
           VP+
Sbjct: 854 VPI 856


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 590 AVLHSPADLHDAVPGCSGAHASPPS 516
           A+L  P+    + PGCS  +  P S
Sbjct: 880 AILKIPSYKPASTPGCSSKNGEPTS 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,754
Number of Sequences: 438
Number of extensions: 5220
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)