Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L10
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   2.1  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   8.4  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    26   8.4  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 352  RLTESDNSLSI*KNKKLQFQQTIITEVSFLRVQKYKF 242
            RL +SD  LS+ K+  L FQ  +  E++ +   +Y F
Sbjct: 1538 RLKDSDPLLSVVKDNWLFFQTILTNEINTVTANRYSF 1574


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 419 NASF*NLCFWYKKKMSNFNGKNRFKI 496
           N  F N C +Y  K  N N  +R+KI
Sbjct: 469 NQGFLNACIYYINKKKNLNEVSRYKI 494


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 577 IRIKHSTIRSVFMASSLHCDINLKPSRNFKSVFAIKIRHLFFIPKTQIL 431
           +++++  +R  F   +     N  P +N K  F     H+ +IPKT+ L
Sbjct: 303 LQLENEQLRLFFKEKAPQPFQNHPPYQNLKITFPSPFFHIPYIPKTETL 351


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 535 SSLHCDINLKPSRNFKSVFAIKIRHLFFIPKTQILKRCVLKHNLHH*TID 386
           SS   ++ +  S N+K+V+  KI+ L  IPK  ++ + VL+  L +   D
Sbjct: 70  SSSRNELVVTVSGNYKNVYTAKIKILQAIPKI-LISKLVLEEPLENLLFD 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,943
Number of Sequences: 5004
Number of extensions: 44124
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)