Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L09
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 105 6e-24
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 103 3e-23
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.39
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 3.6
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 6.3
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 8.3
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 105 bits (253), Expect = 6e-24
Identities = 47/76 (61%), Positives = 57/76 (75%)
Frame = +1
Query: 73 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 252
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 253 MQVCVLGDQQHCDEAK 300
M +C+LGD D AK
Sbjct: 62 MSICILGDAHDLDRAK 77
Score = 101 bits (242), Expect = 1e-22
Identities = 47/72 (65%), Positives = 57/72 (79%)
Frame = +3
Query: 423 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 602
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177
Query: 603 LAQNVHLSINFL 638
LA N+ L+INFL
Sbjct: 178 LAANLSLAINFL 189
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1
Query: 637 LXSLLKKHWQNVRSLHMKSTMGPPQRLY 720
L SLLKK WQN+ SL +KSTMG P RLY
Sbjct: 189 LVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 103 bits (248), Expect = 3e-23
Identities = 47/76 (61%), Positives = 58/76 (76%)
Frame = +1
Query: 73 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 252
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 253 MQVCVLGDQQHCDEAK 300
M +C+LGD D AK
Sbjct: 62 MAICILGDAHDLDRAK 77
Score = 98.7 bits (235), Expect = 1e-21
Identities = 44/72 (61%), Positives = 57/72 (79%)
Frame = +3
Query: 423 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 602
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177
Query: 603 LAQNVHLSINFL 638
L N+ L++NFL
Sbjct: 178 LIANIMLAVNFL 189
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1
Query: 637 LXSLLKKHWQNVRSLHMKSTMGPPQRLY 720
L SLLKK WQN+ SL +KSTMG P RLY
Sbjct: 189 LVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 55 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 219
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 601 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 503
S+G ++ T T R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 492 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFL 638
E + +++ G F + GHV T ELA+NV + F+
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFV 224
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 6.3
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -1
Query: 295 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 116
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 115 RHSRTRRACH 86
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 614 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 450
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,184
Number of Sequences: 5004
Number of extensions: 61484
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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