Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L06
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455...    90   3e-18
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    29   6.8  

>01_05_0526 +
           22944889-22944999,22945207-22945317,22945397-22945592,
           22946454-22946512,22946761-22946958,22947233-22947341,
           22947431-22947696
          Length = 349

 Score = 89.8 bits (213), Expect = 3e-18
 Identities = 43/113 (38%), Positives = 67/113 (59%)
 Frame = +1

Query: 514 MHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEILGIWFYAETQKMCEAKPLQIVE 693
           M  V TNP  G+Y+ ++V G +GDFITSPE+SQ+FGE+ G+W     ++M + + + ++E
Sbjct: 1   MEEVLTNPQSGFYINRDVFGTSGDFITSPEVSQMFGEMTGVWAMCLWEQMGQPEKVNLIE 60

Query: 694 LGSRKSNITN*YVEGSQXKLAIHHTILSIHLVEISSTMQSIQANRLCVSHRPV 852
           LG  +  +    + GS  K       L+I+LVE S T+Q +Q N L     P+
Sbjct: 61  LGPGRGTLLADLLRGSS-KFVNFTKALNINLVECSPTLQKVQYNTLKCEDEPI 112


>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 439 ESAPNLIEIIKEKIRLNGPITVAEYMH-IVTTNPTEGYYMKKEVIGEAGDFITSPEISQL 615
           E A N+IE         GP+   + +  IV  +PT  Y   K  +   G+F++S E+ +L
Sbjct: 389 EEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAGSKTRVFIKGNFLSSDEVKRL 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,053,104
Number of Sequences: 37544
Number of extensions: 297539
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)