Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L06
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   9.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 556 KKEVIGEAGDFITSPEISQLFGEILGIWFYAETQKMCEAKPLQIVEL 696
           K+  +GE  +  T PE++ LF +I+G      T+    A P+ ++ +
Sbjct: 474 KRLWLGETIEAKTYPEVTMLFSDIVGF-----TEICSTATPMMVINM 515


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -3

Query: 344 IFSNILEFICVHFL 303
           I++++LEF+CV+++
Sbjct: 374 IYASLLEFVCVNYV 387


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -3

Query: 344 IFSNILEFICVHFL 303
           I++++LEF+CV+++
Sbjct: 343 IYASLLEFVCVNYV 356


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -3

Query: 344 IFSNILEFICVHFL 303
           I++++LEF+CV+++
Sbjct: 394 IYASLLEFVCVNYV 407


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -3

Query: 344 IFSNILEFICVHFL 303
           I++++LEF+CV+++
Sbjct: 343 IYASLLEFVCVNYV 356


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 493 PITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEILGIWFY 645
           P TV   + +     TEG+           DF+T  E +++F   + IW Y
Sbjct: 184 PFTVLPLLKVWGRYTTEGFLTTCSF-----DFLTDDEDTKVFVTCIFIWAY 229


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 493 PITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEILGIWFY 645
           P TV   + +     TEG+           DF+T  E +++F   + IW Y
Sbjct: 184 PFTVLPLLKVWGRYTTEGFLTTCSF-----DFLTDDEDTKVFVTCIFIWAY 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,415
Number of Sequences: 438
Number of extensions: 3629
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)