Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L04
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.003
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.097
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.13
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.17
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.22
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.39
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.39
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.52
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.68
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.68
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.68
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.90
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 1.2
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 29 1.2
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 1.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 1.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.6
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.6
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 4.8
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 4.8
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 6.3
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 6.3
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 6.3
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 6.3
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 8.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 8.4
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 8.4
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 26 8.4
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 8.4
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 8.4
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +2
Query: 137 ATMADAAVDKKEVAPEEVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPA 307
++ D + K + + +S EP + V KKS K+ ++ES + + ++ S +
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Query: 308 ENGDAEESNDASENGDATEKKETGVK 385
E+ +E + +SE+ + ++E VK
Sbjct: 104 ESSSSESESSSSESSSSESEEEVIVK 129
Score = 33.1 bits (72), Expect = 0.055
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 161 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND- 337
+KKE + + + + ES + S ++ E E K T+E E S + D+E S+D
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSDS 214
Query: 338 ASENGDATEKKET 376
+SE+GD+ ++
Sbjct: 215 SSESGDSDSSSDS 227
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/83 (21%), Positives = 41/83 (49%)
Frame = +2
Query: 146 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 325
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 326 ESNDASENGDATEKKETGVKRKS 394
E +E A+E++ + + S
Sbjct: 236 EKKRKAE--PASEERPAKITKPS 256
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.097
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 164 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEE 328
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ EE
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 179 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 331
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = +2
Query: 182 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 361
E +S+E +S S ++ +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 29.9 bits (64), Expect = 0.52
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 191 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 370
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 371 ET 376
+
Sbjct: 193 SS 194
Score = 29.9 bits (64), Expect = 0.52
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 191 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 370
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Query: 371 ET 376
+
Sbjct: 247 SS 248
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 212 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 358
+P+K+ PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 167 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDAS 343
++V ++TS EPK + KSP +K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 344 ENGDAT 361
+ AT
Sbjct: 1032 DTSTAT 1037
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 245 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 355
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 206 KESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGV 382
K PV++ P K + ++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 383 KRK 391
+K
Sbjct: 182 DKK 184
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.52
Identities = 22/76 (28%), Positives = 28/76 (36%)
Frame = +2
Query: 170 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 349
E +P S + + K K + E KE EA EE A N
Sbjct: 374 ESSPATSISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEVAENN 433
Query: 350 GDATEKKETGVKRKSV 397
TEKKET +K +V
Sbjct: 434 EVVTEKKETDIKSDAV 449
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.5 bits (63), Expect = 0.68
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +2
Query: 188 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 367
V ++E ES + S ++ E ES +DE+ +S +E+ ++EE +++ E D +E+
Sbjct: 75 VAASEDSESDSESS--EEEEETESEEDSEVSDESESESESES-ESEEESESEEESDESER 131
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.68
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 188 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 355
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNN 224
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.68
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 182 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 355
+E + KES K++PA+K + A NG E G A + D EE N D
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKE-DGEEGGKRKRNQD 111
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.90
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 170 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 328
++ PE+ + + PVKK P+KK + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 224 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKR 388
K P+ K + S+ +NG+D DS + N SN +EN +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 706 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 557
++LL C ++ L+LN+ + L +R + ++ SGICGC
Sbjct: 93 KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 185 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 352
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 194 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 358
S P++SPV+ V+ +ESN K +GT+ + +P NG+ EE N+ G
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGN-EEVNNLEPVGQN 232
Query: 359 TEKKE 373
K+E
Sbjct: 233 ESKQE 237
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 251 AESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 403
+ES ++ DE E+ EN D + D +EN + + E G S A+
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 266 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 403
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 200 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 379
E +S + S + +A S+ +E ++E ED+ E+G +E + E+G+ ++ E
Sbjct: 939 EGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
Query: 380 VKRKSVALD 406
+++ D
Sbjct: 999 ARQEDAKHD 1007
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 242 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 373
VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 630 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 523
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 188 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 358
+ ++ K SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 359 TEKKETGVKR 388
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 173 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 334
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 152 AAVDKKEVAPEEVTSTEPKESPV----KKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 319
A VD++E+ EE + PV K S +K S K + EDS GD
Sbjct: 75 AQVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGD 134
Query: 320 AEESN 334
E+ +
Sbjct: 135 EEDGS 139
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 704 LQIVNLCM*LPVTECIAVN*SHKIECCMLFXVSLSFS 814
LQ + L M L + C+ + + + CC+ F VSLSF+
Sbjct: 74 LQKLRLKMDLRIIPCLWI--LYFLSCCLRFTVSLSFT 108
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 284 EAPEDSPAENGDAEESNDASENGDATEK 367
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 8.4
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +2
Query: 206 KESPVKKSPAKKVEAAESNGKENG-------TDEAPEDSPAENGDAEESNDA-SENGDAT 361
K +PV A VE AE NG E+ + E ED A+ + +A E +
Sbjct: 403 KPAPVVAPAAPTVE-AEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKK 461
Query: 362 EKKETGVKRK 391
EKKE K+K
Sbjct: 462 EKKEKKEKKK 471
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 8.4
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 203 PKES-PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG-DAEESNDASENGDAT-EKKE 373
PK S P +PA V A +S NG E+ ENG D SND+ +G E+ E
Sbjct: 396 PKSSFPTSSTPAS-VGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSLVSGKGKGEENE 452
Query: 374 TGV 382
V
Sbjct: 453 DSV 455
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 843 VDKRFVPTSSEKDNDTXNSIQHSIL 769
V + VPTSS K+ T +S+QH+I+
Sbjct: 452 VGTKSVPTSSIKEYLTKSSLQHTIV 476
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = +2
Query: 140 TMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 319
T A+ ++D S++P E+P S K + E++ K+ +E + AE
Sbjct: 333 TEAEQSIDVSSDIGLRSDSSKPNEAPT-SSENIKADQPENSTKQENPEEDMQIKDAEEHS 391
Query: 320 AEESNDASENGDATEKKETGVKRKSV 397
ES A++ E K S+
Sbjct: 392 NLESTPAAQQTSEVEANNHQEKPSSL 417
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 155 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 298
++D+ +P ++S K SP K+ +K ++A + TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,120
Number of Sequences: 5004
Number of extensions: 58470
Number of successful extensions: 273
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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