Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L03
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.2
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 28 2.0
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 27 3.6
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 3.6
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.7
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 6.2
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.2
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.2
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho... 26 8.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 619 SSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 792
SST S +SS SLN++ + S I S TP TSS S T + S
Sbjct: 214 SSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATS 271
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Frame = +2
Query: 146 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 319
G+ CL GC G G +L+ + R + A R + + E E G+
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351
Query: 320 LTVFETFLPLS--PVGLLLQQLP 382
+L LS P +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 160 SLPVWLWVCWPRKTHAIRTSTKDA 231
++P+ LW+C P T + TST+DA
Sbjct: 94 NVPITLWICAP-LTAILSTSTRDA 116
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 64 KAVLSTYVKRTCYFFENS 117
KAV YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 669 ITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNG 776
I Q +++FV + + L + + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 571 GQSLGTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRR 690
G+S GTR+ G SSST K A+S + P + N ++
Sbjct: 1233 GKSTGTRKPRAIAGSSSSTAVK-KEASSESKPSTTNRKQQ 1271
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 573 PKPWDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLK 752
P P + ++ + I VT NS + Y+E E+ + + S++ H DL
Sbjct: 290 PVPMEAAEEEPATEYSIPSSVTFNSQNDCFSNAMNYLEHEYETLVSTFTLSVSEHWEDLL 349
Query: 753 RFITENNGKDL 785
R T++ K+L
Sbjct: 350 RKATDSCQKEL 360
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 565 SPGQSLGTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPR 744
S S + SSL +SS+ + + TSS+ S ++S +S S +SR + R
Sbjct: 116 SSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSR 175
Query: 745 TSS 753
T+S
Sbjct: 176 TTS 178
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +1
Query: 565 SPGQSLGTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPR 744
S S + +S SSS+ ++ SST S ++S +S VS +S +T
Sbjct: 327 SSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSS 386
Query: 745 TSSGS*PRTT 774
+SS S P ++
Sbjct: 387 SSSSSRPASS 396
>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
5',5'''-p1,p6-hexaphosphate hydrolase Aps1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 475 EGWEDGLLESHHTEXXXXXXXXXXXXXXDRSPGQSLGTRRSSLPRGFSSSTGKSLKTAT 651
EGWE+G L H T D+ P ++ R+ L + S S+G + T T
Sbjct: 89 EGWEEGGLVGHITR--------SLGSFKDKRPTDTIDRRKKYLKQLMSKSSGNDVSTNT 139
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 580 LGTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS 759
+GTR SS SSS+ S +++SS+ P S ++ +S S +S+ + +SS S
Sbjct: 137 IGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSS 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,479
Number of Sequences: 5004
Number of extensions: 60791
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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