Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_L03
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 35 0.068
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 34 0.12
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 31 1.1
U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 7.8
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 7.8
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 7.8
AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein. 28 7.8
AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineag... 28 7.8
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 627 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 782
+ V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.12
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 657 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 755
+DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 657 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 755
+DA +T +IEE+++ +Q +I A ++LKR
Sbjct: 121 NDAHLTDFIEEKYLDEQVKSINEFARMVANLKR 153
>U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical
protein C39D10.3a protein.
Length = 330
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 194 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 289
GRLML ++ M+T DFKSA L L P+ +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 630 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 779
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 630 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 779
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 681 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 800
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 681 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 800
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 583 GTRRSSLPRGF---SSSTGKSLKTATSSTMPRSLNTS---RRNS*VSKPIRF 720
G + +LP GF S + K +KTA SS P+S+ T R++ +S P F
Sbjct: 103 GPNQEALPPGFNLFSPPSRKKIKTAFSSPPPKSMKTPDSLRKSIRISSPSPF 154
>AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineage
defect protein 2 protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 583 GTRRSSLPRGF---SSSTGKSLKTATSSTMPRSLNTS---RRNS*VSKPIRF 720
G + +LP GF S + K +KTA SS P+S+ T R++ +S P F
Sbjct: 103 GPNQEALPPGFNLFSPPSRKKIKTAFSSPPPKSMKTPDSLRKSIRISSPSPF 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,731,210
Number of Sequences: 27780
Number of extensions: 347198
Number of successful extensions: 963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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