Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L02
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.44 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.58 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   2.3  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   9.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 481 PPPPPXGGGXXPPRGGXXXPPPXGFXK 401
           PPPPP   G  PP      PPP G+ K
Sbjct: 9   PPPPPPPPGFEPP-SQPPPPPPPGYVK 34



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 480 PPPPPXXGGXPPPXGGXXPPP 418
           PPPPP  G  PP      PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 480 PPPPPXXGGXPPPXGGXXPPPXXXXXKXPPPP 385
           PPPP      P P     PPP       PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 29.5 bits (63), Expect = 0.77
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = -3

Query: 480 PPPPPXXGGXPPPXGGXXP-PPXXXXXKXPPPP 385
           PPPPP     P P     P PP       PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -3

Query: 480 PPPPPXXGGXPPPXGGXXPPPXXXXXKXPPPP 385
           PPPPP     PP   G  PPP       PPPP
Sbjct: 761 PPPPPP----PPGVAGAGPPP-----PPPPPP 783



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 480 PPPPPXXG-GXPPPXGGXXPPPXXXXXKXPPPP 385
           P PPP    G PPP     PPP       PPPP
Sbjct: 750 PVPPPAPIMGGPPP----PPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 480  PPPPPXXGGXPPPXGGXXPPPXXXXXKXPPPP 385
            P PPP     PPP     PP        PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSA--PPMPAGPPSAPPPP 1734


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 480 PPPPPXXGGXPPPXGGXXPPPXXXXXKXPP 391
           PPPPP     PP      PP        PP
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPP 235


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 479 PPPPXGXGXXPPPXG 435
           PPPP G G   PP G
Sbjct: 129 PPPPAGFGRGAPPPG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.149    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,495
Number of Sequences: 5004
Number of extensions: 23498
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)