Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_L01
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    28   2.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    27   5.1  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    26   6.8  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   6.8  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   6.8  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   9.0  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 595 YVDLLPLFRVNIWSELVQYRLGAVVEELIGVGHVVHVDLDEGPHRRP 455
           Y+ L    R N+W  +  Y L    E L+G  ++    L +G +R P
Sbjct: 76  YIPLDTSSRANLWESVTDYDLQHANEPLVGNYYISTEALGDGLNRSP 122


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = -2

Query: 577 LFRVNIWSELVQYRLGAVVEELIGVGHVVHVDLDEGPHRRPPHHSNVIEPGRSTSSWSMK 398
           LF    WS  +   L + VE  I V  ++H    E PH    H   V    R  SS S K
Sbjct: 294 LFEDGKWSPPIVPGLHSRVEFTIPVNDLIHGSCTENPHLLVRHSIYVSIHSREPSSLSRK 353


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 574 RVGEDQHNRQREWHAVLPLQEDVHLPAGDEQRDGRRCGRRAQ 699
           R G D++ R        P  ++   P GDE R GR   RR++
Sbjct: 236 RGGRDEYRRNSRSDYRRPHDDEYRRPRGDEYRPGRDEYRRSR 277


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 387 WIRLFIDHELVLRPGSMTFEWWG 455
           W+R F  HE  ++P  +T+++ G
Sbjct: 111 WVRFFQVHEFPIKPRGLTYDFVG 133


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 848 ERIDXXXPDS*PTTPRQKA*SSICP*WKPWRDAGT*RRASIEMSRSALV 702
           ERID    DS  T P     +  C  W+ W D       ++ ++R ALV
Sbjct: 440 ERIDELPEDSLRTQPLSLIGNGDCYSWQDWYDGVNKGVDTVMIARGALV 488


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 722 SQSKHAARFLRLAMASIMDILKIKPFVEVSSVSCL 826
           S  +H +RF++  +A+  +  +   F E++S SCL
Sbjct: 405 STDQHGSRFIQQKLATATEEEREAVFQEIASTSCL 439


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 632 KRTYTFQPEMSNGMDDDAVVVPNIPMLS-ATSQSKHAARFLRLAMASIM 775
           +RTYT   E+SNG++ + V   +I   S  +S S +  RF   +  SI+
Sbjct: 222 RRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESII 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,241
Number of Sequences: 5004
Number of extensions: 48540
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)