Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K24
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591...    37   0.024
01_05_0525 + 22928295-22928492,22929435-22929584,22929679-229298...    29   3.6  
06_01_0180 - 1397432-1399969                                           29   6.3  
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921...    28   8.4  
02_01_0408 - 2972240-2975380                                           28   8.4  

>08_02_1431 +
           27057706-27057900,27058701-27058815,27059123-27059170,
           27059272-27059524,27059689-27059776,27059883-27059948,
           27060335-27060403,27060492-27060597,27060639-27060793,
           27061208-27061537
          Length = 474

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 39/110 (35%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
 Frame = +3

Query: 402 FGNFINYYSFH---NVAE--RINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYKLLKNL 566
           +GN+ NYY +    NV E  R+       F    E   CLDIGCN G +T  L    K  
Sbjct: 55  YGNYRNYYGYRIDRNVDEDPRLKIFKREWF----ESKDCLDIGCNQGLVTIGLAAKFK-- 108

Query: 567 YPQCMLHILAVDIDSVLINRAQES--NTERNIEYTTANVMAKSDRDSINE 710
              C   IL VDIDS LI  A  +     R  +    N  A    DS +E
Sbjct: 109 ---CQ-SILGVDIDSGLIETANWNLRRMSRLDKVVVENTKAHKSSDSPSE 154


>01_05_0525 +
           22928295-22928492,22929435-22929584,22929679-22929813,
           22929914-22929979,22931704-22931793,22932414-22932495,
           22932703-22932908
          Length = 308

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 419 VYKISKFNSPRITAKIIQIFS-SFFHFYFPCCKCKYERLF 303
           +YK +KFNS +   +  +      F FYF C KC  E  F
Sbjct: 50  IYKGTKFNSRKEDVEGEKYLGIQIFRFYFKCTKCSAEITF 89


>06_01_0180 - 1397432-1399969
          Length = 845

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 402 FGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYK 551
           FG  +  +    V++ +N+L+ N+F    + I  LD+   TG+L+   YK
Sbjct: 315 FGYLVRLFFADIVSKSMNDLYFNVFVNGRKAISGLDLSTVTGELSAAYYK 364


>02_05_1142 -
           34391144-34391590,34391715-34391904,34392058-34392128,
           34392403-34392515,34392656-34392749,34392843-34392908,
           34393120-34393282,34393441-34393547,34393918-34394115,
           34394204-34394329,34394800-34394904,34395056-34395098,
           34395334-34395391,34395479-34395659,34395751-34395917,
           34396010-34396249,34396341-34396781,34397147-34397272,
           34397457-34397561,34397935-34398002,34398169-34398272,
           34398856-34399008,34399472-34399570,34399919-34400046,
           34400149-34400300,34400423-34400502
          Length = 1274

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 363 DLDYFGSDP-GAVKFGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIG 515
           ++ Y   +P  A  FG      +       I    PN+ P++  DIY L +G
Sbjct: 699 EVSYISDEPVAAASFGQVYQGRTVDGALVAIKVQRPNLLPSVLRDIYILRLG 750


>02_01_0408 - 2972240-2975380
          Length = 1046

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 339  VKMKERTKDLDYFGSDPGAVKFGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLD 509
            ++MK +   L+    DP     GN         VA +  N +P M PT+TE + CLD
Sbjct: 987  LEMKSKGNMLEVL--DPTLQGTGNEEQMLKVLEVACKCVNCNPCMRPTITEVVSCLD 1041


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,715,782
Number of Sequences: 37544
Number of extensions: 375178
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)