Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K24
         (863 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053560-1|AAH53560.1|  292|Homo sapiens BCDIN3 domain containin...    81   4e-15
BC018935-1|AAH18935.2|  689|Homo sapiens bin3, bicoid-interactin...    34   0.77 
BC000556-1|AAH00556.2|  689|Homo sapiens bin3, bicoid-interactin...    34   0.77 

>BC053560-1|AAH53560.1|  292|Homo sapiens BCDIN3 domain containing
           protein.
          Length = 292

 Score = 81.4 bits (192), Expect = 4e-15
 Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 15/147 (10%)
 Frame = +3

Query: 387 PGAVKFGNFINYYSFHNVAERINNLHPNM----FPTLTED--IYCLDIGCNTGDLTRELY 548
           PGA  FGNF +Y  FH   +R+  L P +    FP   E+  I  LD+GCN+GDL+  LY
Sbjct: 26  PGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFPESPENGPILGLDVGCNSGDLSVALY 85

Query: 549 KLLKNLYP--QCM-----LHILAVDIDSVLINRAQ-ESNTERNIEYTTANVMAKSDRDSI 704
           K   +L     C        +L  DID VL+ RA+ E      + + T + M +  R  +
Sbjct: 86  KHFLSLPDGETCSDASREFRLLCCDIDPVLVKRAEKECPFPDALTFITLDFMNQRTRKVL 145

Query: 705 -NEYLKKNGRSMFDITFXFXVSMWIHL 782
            + +L + GRS+FDI F   ++MWIHL
Sbjct: 146 LSSFLSQFGRSVFDIGFCMSITMWIHL 172


>BC018935-1|AAH18935.2|  689|Homo sapiens bin3, bicoid-interacting
           3, homolog (Drosophila) protein.
          Length = 689

 Score = 33.9 bits (74), Expect = 0.77
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +3

Query: 399 KFGNFINYYSFHNVA---ERINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYKLLKNLY 569
           ++GN+  YY + N +    R+  L P  F     D+  LD+GCN G LT     +     
Sbjct: 414 QYGNYCKYYGYRNPSCEDGRLRVLKPEWFRG--RDV--LDLGCNVGHLT---LSIACKWG 466

Query: 570 PQCMLHILAVDIDSVLINRAQES 638
           P  M   + +DIDS LI+ A+++
Sbjct: 467 PSRM---VGLDIDSRLIHSARQN 486


>BC000556-1|AAH00556.2|  689|Homo sapiens bin3, bicoid-interacting
           3, homolog (Drosophila) protein.
          Length = 689

 Score = 33.9 bits (74), Expect = 0.77
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +3

Query: 399 KFGNFINYYSFHNVA---ERINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYKLLKNLY 569
           ++GN+  YY + N +    R+  L P  F     D+  LD+GCN G LT     +     
Sbjct: 414 QYGNYCKYYGYRNPSCEDGRLRVLKPEWFRG--RDV--LDLGCNVGHLT---LSIACKWG 466

Query: 570 PQCMLHILAVDIDSVLINRAQES 638
           P  M   + +DIDS LI+ A+++
Sbjct: 467 PSRM---VGLDIDSRLIHSARQN 486


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,513,874
Number of Sequences: 237096
Number of extensions: 2295462
Number of successful extensions: 3422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3418
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)