Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K24
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical...    34   0.11 
AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical...    34   0.11 
Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical...    31   0.80 
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    31   0.80 
Z75543-3|CAA99877.1|  276|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical ...    29   5.7  
U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine rece...    28   7.5  
U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane p...    28   7.5  
U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    28   7.5  
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    28   9.9  
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    28   9.9  
AC006776-6|AAF60624.1|  356|Caenorhabditis elegans Serpentine re...    28   9.9  

>AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18b protein.
          Length = 381

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +3

Query: 348 KERTKDLDYFGSDPGAVKFGNFINYYSFH-NVAERINNLHPNMFPT-LTEDIYCLDIGCN 521
           + R +  +YF       ++GNF  YY    N  E    L  ++F     E    LDIGCN
Sbjct: 107 ENRKQKTEYFNKK---YRYGNFDRYYGIRLNPGESDKRL--SVFQKDWFEHKQALDIGCN 161

Query: 522 TGDLTRELYKLLKNLYPQCMLHILAVDIDSVLINRAQES 638
            G LT     + K+  P+    I+ +DID  LI  A+++
Sbjct: 162 AGFLT---LSIAKDFSPR---RIIGIDIDEHLIGVARKN 194


>AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18a protein.
          Length = 378

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +3

Query: 348 KERTKDLDYFGSDPGAVKFGNFINYYSFH-NVAERINNLHPNMFPT-LTEDIYCLDIGCN 521
           + R +  +YF       ++GNF  YY    N  E    L  ++F     E    LDIGCN
Sbjct: 104 ENRKQKTEYFNKK---YRYGNFDRYYGIRLNPGESDKRL--SVFQKDWFEHKQALDIGCN 158

Query: 522 TGDLTRELYKLLKNLYPQCMLHILAVDIDSVLINRAQES 638
            G LT     + K+  P+    I+ +DID  LI  A+++
Sbjct: 159 AGFLT---LSIAKDFSPR---RIIGIDIDEHLIGVARKN 191


>Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 423 YSFHNVAERIN--NLHPNMFPTLTEDIYCLDIGCNTGDLTRELYK 551
           YS +N  +  N  NLHP+   T+TE +  L++G +T ++  +L K
Sbjct: 317 YSTYNKRQYFNFENLHPDFCVTITEIVALLNLGISTENIEAKLCK 361


>AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 423 YSFHNVAERIN--NLHPNMFPTLTEDIYCLDIGCNTGDLTRELYK 551
           YS +N  +  N  NLHP+   T+TE +  L++G +T ++  +L K
Sbjct: 317 YSTYNKRQYFNFENLHPDFCVTITEIVALLNLGISTENIEAKLCK 361


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 458 IVYSLSHVMK*IVVYKISKFNSPRITAKIIQIFSSFFHFYFPCCKCKYERLF 303
           I+Y L+  M   V  K SKF    + A ++Q     F  +FPC  C Y  +F
Sbjct: 221 IMYKLNK-MSVNVSKKTSKFQFELLRALVVQTVVPIFISFFPCLLCWYSPMF 271


>Z75543-3|CAA99877.1|  276|Caenorhabditis elegans Hypothetical
           protein K01D12.3 protein.
          Length = 276

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 336 EVKMKERTKDLDYFGSDPGAV 398
           EVK+KE    +D+FG+DP AV
Sbjct: 97  EVKLKELYPKIDFFGADPAAV 117


>Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical
           protein ZK909.2c protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 565 FILNACCTYWPLTLTQYS*TVLKSLTPNETLNTQPQM 675
           FIL+  C   PL +T  +     +LTP+ T  T P M
Sbjct: 31  FILHPLCRTGPLQMTVKASNSTTTLTPSSTTTTSPSM 67


>AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical
           protein H14E04.1 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 444 ERINNLHPNMFPTL--TEDIYCLDIGCNTGDLTREL 545
           E + +LH ++   L  +E+++CLDIGC  G +  ++
Sbjct: 78  EALKSLHCHIAEKLELSENVHCLDIGCGIGGVMLDI 113


>U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein11 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 671 CGCVFNVSFGVRLLSTVYEY*VNVNGQYVQHALR 570
           CGC+ ++S+G+ ++  +Y Y V  N + +   LR
Sbjct: 96  CGCI-SLSYGILVIHFIYRYLVLFNTRIIDRLLR 128


>U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane
           protease (impas)family protein 3 protein.
          Length = 516

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 748 VISNIDLPFFLRYSLIESRSLFAMTFAVVY-SMFRSVLDS*ARFMSTESM 602
           ++  + L   L+YS +   +LFA+TFA V+ S+  SV  S  R  +T +M
Sbjct: 439 MVPGVFLNVVLKYSSMYDTNLFAITFAAVFASLVFSVFFSIWRSKTTPAM 488


>U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical
           protein F37C12.1 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 419 VYKISKFNSPRITAK-IIQIFSSFFHFYFPCCKCKYERLF 303
           +YK  KFN  R TA+    +    F FYF C  C  E  F
Sbjct: 52  IYKGKKFNMKRETAEGETYLGLKLFRFYFRCPNCLAEITF 91


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
 Frame = -2

Query: 751 NVISNIDLPFFLRYSLIESRSLFAMTFAVVYSM-----FRSVLDS*ARFMSTESMSTANM 587
           N++   D+ +F+ + L     ++ M+  ++ S         +L S A F+++ + +   M
Sbjct: 443 NIVGPKDICYFISWYLATDLQIYIMSPLILLSFGLGGAVVGLLISTAAFLASTAFNAYQM 502

Query: 586 CNMH*G*RFFNSLYNSLVRSPVLQPMSRQYISSVKVGNIFGCKLFILSATL 434
              H    F  S YN   + P+  P  R+Y +      +  C+++I+   L
Sbjct: 503 IFWH----FPPSDYNYGPKDPLYDPSKRRYAAWNYHNPLIRCQIYIMGMVL 549


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 609 SQCQRPICATCIEDKGFLIVYTILL*DLQYCNQCPGNI 496
           S C+R    TC + KG L     +  +++YC  C  ++
Sbjct: 149 STCKRSFHVTCAQRKGLLCEEGAISRNVKYCGYCENHL 186


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 609 SQCQRPICATCIEDKGFLIVYTILL*DLQYCNQCPGNI 496
           S C+R    TC + KG L     +  +++YC  C  ++
Sbjct: 149 STCKRSFHVTCAQRKGLLCEEGAISRNVKYCGYCENHL 186


>AC006776-6|AAF60624.1|  356|Caenorhabditis elegans Serpentine
           receptor, class w protein99 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 580 CCTYWPLTLTQYS*TVLKSLTPNETLNTQPQMSWQKVIVIQSMNISRKMVDQ 735
           C ++  + L      +LKSLT       +P++ W+  IV+Q ++ +  +V Q
Sbjct: 111 CSSWLGVLLASVRYVILKSLTDRSKF-AKPKVGWKLFIVVQCVSATLSLVYQ 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,203
Number of Sequences: 27780
Number of extensions: 382915
Number of successful extensions: 792
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)