Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K22
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131230-1|BAD18413.1|  339|Homo sapiens protein ( Homo sapiens ...    31   4.2  
AK094751-1|BAC04412.1|  157|Homo sapiens protein ( Homo sapiens ...    31   5.6  
DQ535362-1|ABF83305.1|  129|Homo sapiens circulating B cell anti...    30   9.8  
BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        30   9.8  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        30   9.8  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       30   9.8  

>AK131230-1|BAD18413.1|  339|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16139 fis, clone BRALZ2017844, moderately
           similar to HOMEOBOX PROTEIN CHOX-E. ).
          Length = 339

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +1

Query: 568 PLESSLVALSCSDPAAYRIPVRLSPFGXAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFS 747
           PL +S V L    PAA ++    +P+G  W F +      S R    AP    CT  P +
Sbjct: 75  PLPASPVPLKLC-PAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGRAPGDRDCTFQPSA 133

Query: 748 P 750
           P
Sbjct: 134 P 134


>AK094751-1|BAC04412.1|  157|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37432 fis, clone BRAWH2001701, weakly similar to
           Homo sapiens testes development-related NYD-SP22 mRNA.
           ).
          Length = 157

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 471 FHRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFP-PGKLPRCALLFRPCRLP 620
           F  LRPP       +   R   P+    ++A P P   PRC L  RPCR+P
Sbjct: 102 FAGLRPPQPGSTPHKPRPRTPPPSSPASFRAGPQPALAPRCTLS-RPCRVP 151


>DQ535362-1|ABF83305.1|  129|Homo sapiens circulating B cell
           antibody heavy chain variable region protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 621 PVSGRVGTGERNEGAF----QGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 454
           P SG  G+ ++ +G         T   ++ LSG  + D +V FC    GGG      A R
Sbjct: 55  PYSGNTGSAQKFQGRVTMTRDTSTSTAYMELSGLTSDDSAVYFCARGGGGGI---AVAGR 111

Query: 453 PFYG 442
            +YG
Sbjct: 112 SYYG 115


>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 640 EKGGQVSGKRQGRNRRAQRGSFPGGNA 560
           EKG +VSGKR+GRN  A   S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 640 EKGGQVSGKRQGRNRRAQRGSFPGGNA 560
           EKG +VSGKR+GRN  A   S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 640 EKGGQVSGKRQGRNRRAQRGSFPGGNA 560
           EKG +VSGKR+GRN  A   S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,468,475
Number of Sequences: 237096
Number of extensions: 2638155
Number of successful extensions: 8246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8243
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)