Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K19
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 828 PPXXKXXPPXXXPLXXPSXPPPXPP 902
           PP     PP       PS PPP PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 829 LPXXXKXPXPPPPXXXHPXRPXXP 900
           LP     P PPPP    P +P  P
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 818  SXPPSPXXXKXPXXXPPXXPIPPAPXSPXP 907
            S PP P     P   PP  P PP P S  P
Sbjct: 1713 SVPPPPSAPPMPAG-PPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 825  PPPXXKXXPPXXXPLXXPSXPPPXPP 902
            PPP     PP   P+  P+ PP  PP
Sbjct: 1709 PPPMSVPPPPSAPPM--PAGPPSAPP 1732


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/69 (31%), Positives = 23/69 (33%)
 Frame = -1

Query: 898 GXGGGXDGXXRGXXXGGFXXXXGGGXRKXGXANXGVXXX*KXRRXXGGERXXERGGXQXG 719
           G  GG  G   G   GGF    GG     G A  G     +  R   G     RGG   G
Sbjct: 6   GSRGGRGGSRGGR--GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63

Query: 718 GXFXXGGRK 692
                GG K
Sbjct: 64  RGGAKGGAK 72


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 824 PPSPXXXKXPXXXPPXXPIPPAPXSPXP 907
           P +P     P   P   P+PPA  +P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +3

Query: 825 PPPXXKXXPPXXXPLXXPSXPPPXPP 902
           PP      PP   P      PPP PP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPP 258


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 23/77 (29%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
 Frame = -2

Query: 906 GXGXXGAGGMGXXGGXXXGXFXXXGEGGXEKXXXXTXXXXXXRKXGGXXGGREXXREGAT 727
           G    G GG G  GG         G GG                 GG  GG      G  
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGF--GGGPGGFEGGPGGFGGGPGGFGGGLGGFG 255

Query: 726 XGXGXFXXG-GGKXAPG 679
            G G F  G GG   PG
Sbjct: 256 GGPGGFGGGPGGHGGPG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,589
Number of Sequences: 5004
Number of extensions: 37501
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)