Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K18
(1034 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.35
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 10.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.35
Identities = 34/146 (23%), Positives = 42/146 (28%), Gaps = 7/146 (4%)
Frame = +2
Query: 572 GXRPXAXP--PPXAXNAXVXXPPXXGP**XXPPPTXXPLPXIXXPPAPRRHXPXRXSAAX 745
G RP A P PP + + P P PP P P AP P +
Sbjct: 960 GPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSS 1019
Query: 746 RXTEVPXXXGXPXXAXXXXXXXPQVXQPTTXGFP-----XPXXPXPPXXPXRAAXTLPSX 910
+ VP P +T P P P P P ++P+
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Query: 911 GGAXLXRASXPKWXXDVDPGXVXLPP 988
GA A P V V PP
Sbjct: 1080 SGAPPVPA--PSGIPPVPKPSVAAPP 1103
Score = 29.9 bits (64), Expect = 0.61
Identities = 33/134 (24%), Positives = 37/134 (27%), Gaps = 1/134 (0%)
Frame = +2
Query: 509 PXPXTXXXXPLXXGARXAPXPGXRPXAXPPPXAXNAXVXXPPXXGP**XXPPPTXXPLPX 688
P P P+ + AP P P PP V PP P PP P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAP-PVPVPSGAPP--VPKPSVAAPPVPAP--SGAPPVPKPSVA 1167
Query: 689 IXXPPAPRRHXPXRXSAAXRXTEVPXXXGXPXXAXXXXXXXPQVXQPTTXGFPXPXXPXP 868
PAP P A VP P P T P P P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 869 P-XXPXRAAXTLPS 907
P P A +P+
Sbjct: 1228 PVPVPTAKAPPVPA 1241
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = +3
Query: 816 RSXSPPRXXSPXRXPPXRXTILXAPPXXSPPXEGPXSHAPXXPNGXXTXTRXASPXLXXP 995
R S PR +P PP + + SP E P H P P T A+P P
Sbjct: 956 RKASGPRPAAPPSIPPP---LPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVP 1012
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.5
Identities = 24/101 (23%), Positives = 28/101 (27%), Gaps = 6/101 (5%)
Frame = +2
Query: 596 PPXAXNAXVXXPPXXGP**XXPPPTXXPLPXIXXPPAPRRHXPXRXSAA------XRXTE 757
PP +A PP P PP + PPAP P R + A T
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 758 VPXXXGXPXXAXXXXXXXPQVXQPTTXGFPXPXXPXPPXXP 880
P P P P+ P PP P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 825 SPPRXXS-PXRXPPXRXTILXAP--PXXSPPXEGPXSHAPXXP 944
+PP S P PP R L AP P PP G S P P
Sbjct: 229 APPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSP 271
Score = 26.6 bits (56), Expect = 5.7
Identities = 22/105 (20%), Positives = 30/105 (28%)
Frame = +3
Query: 702 LPPAGTXXXGXRXPLAGPRXPXAPXXXXLRRAXXXXXRRSXSPPRXXSPXRXPPXRXTIL 881
LPP G P + P P RA + P +P P +
Sbjct: 353 LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRT 412
Query: 882 XAPPXXSPPXEGPXSHAPXXPNGXXTXTRXASPXLXXPTSLXXPP 1016
PP +PP P + P+ + A P S P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.3
Identities = 24/102 (23%), Positives = 30/102 (29%)
Frame = +2
Query: 593 PPPXAXNAXVXXPPXXGP**XXPPPTXXPLPXIXXPPAPRRHXPXRXSAAXRXTEVPXXX 772
P A N+ V PP P P T P PP P +A +
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSS 215
Query: 773 GXPXXAXXXXXXXPQVXQPTTXGFPXPXXPXPPXXPXRAAXT 898
G P+ P P P P PP P ++ T
Sbjct: 216 GRAVSPEIPPTYTPKQADP----LPAPPPPPPPTLPPQSTNT 253
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.7
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +2
Query: 551 ARXAPXPGXRPXAXPPPXAXNAXVXXPPXXGP**XXPPPTXXPLPXIXXPPAP 709
A P RP + PP PP P PPP+ P+P P AP
Sbjct: 1684 AHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVP----PPPSAPPMP-AGPPSAP 1731
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 858 PPXRXTILXAPPXXSPPXEGPXSHAPXXPN 947
PP + A P +PP P S AP PN
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.7
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +3
Query: 825 SPPRXXSPXRXP---PXRXTILXAPPXXSPPXEGPXSHAPXXPNGXXTXTRXASPXLXXP 995
+PP S R P P R +I P +PP S AP P+ + A+P P
Sbjct: 129 APPTPQSELRPPTSAPPRPSIPPPSPASAPPI---PSKAPPIPSSLPPPAQPAAPVKSPP 185
Query: 996 TSLXXP 1013
++ P
Sbjct: 186 SAPSLP 191
Score = 25.8 bits (54), Expect = 10.0
Identities = 18/70 (25%), Positives = 21/70 (30%)
Frame = +2
Query: 698 PPAPRRHXPXRXSAAXRXTEVPXXXGXPXXAXXXXXXXPQVXQPTTXGFPXPXXPXPPXX 877
P AP P S T P P + P P P P P P
Sbjct: 125 PSAPA--PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 878 PXRAAXTLPS 907
+A +LPS
Sbjct: 183 SPPSAPSLPS 192
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 10.0
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +2
Query: 563 PXPGXRPXAXPPPXAX-NAXVXXPPXXGP**XXPPPTXXPLPXI 691
P P P PPP PP G PPP P P +
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,009
Number of Sequences: 5004
Number of extensions: 21684
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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