Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K16
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032654-2|CAA21718.1| 257|Caenorhabditis elegans Hypothetical ... 115 4e-26
AL032654-3|CAE54915.1| 101|Caenorhabditis elegans Hypothetical ... 81 8e-16
U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U13644-1|AAB52683.1| 437|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U00048-10|AAB53823.2| 852|Caenorhabditis elegans Related to yea... 32 0.63
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 29 3.4
Z70212-10|CAA94169.2| 319|Caenorhabditis elegans Hypothetical p... 29 4.5
Z50177-8|CAA90548.2| 319|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical ... 29 5.9
AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical ... 28 7.8
AC006642-5|AAF39826.2| 87|Caenorhabditis elegans Hypothetical ... 28 7.8
>AL032654-2|CAA21718.1| 257|Caenorhabditis elegans Hypothetical
protein Y52B11A.2a protein.
Length = 257
Score = 115 bits (277), Expect = 4e-26
Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Frame = +2
Query: 251 EIEALKSIYTE--ELTIDSEITRSYTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPW 424
EIE+L SI+ + E T D ++ + +++ + + LPEDYPSISPP FELS P+
Sbjct: 10 EIESLASIFPDLLEETTDKQLVFKFD-------RDIGMTINLPEDYPSISPPIFELSGPY 62
Query: 425 MDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVLQTVCKVEKKIEVTEPEVDSLDLT 604
+ R+ K LH +L+++Y++N+G VIF W+ ++++ ++ + + EV EP + D+
Sbjct: 63 LRREQKEVLHNSLNDVYIENIGFPVIFNWISLVQDFIRDLPE-----EVAEPSHVADDVV 117
Query: 605 T---IEINCPEITHGEIIADRKSIFQGHAAEVHSIDDVKAVLNNL 730
T EI+ I HGE++ DRKS FQ H AEV S +DV V+ L
Sbjct: 118 TPMAEEIDDMNIRHGEVLTDRKSAFQAHLAEVRSKEDVDRVMRIL 162
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 730 KQNRKILNATHNMYAYRIERKLLXGTNVLQDCDDD 834
K N KI ATHN+ AYR ++ DC DD
Sbjct: 163 KSNTKICRATHNITAYRYMTEINGKPIHHHDCVDD 197
>AL032654-3|CAE54915.1| 101|Caenorhabditis elegans Hypothetical
protein Y52B11A.2b protein.
Length = 101
Score = 81.4 bits (192), Expect = 8e-16
Identities = 37/98 (37%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Frame = +2
Query: 251 EIEALKSIYTE--ELTIDSEITRSYTIRIEENKKEVLLYVTLPEDYPSISPPKFELSAPW 424
EIE+L SI+ + E T D ++ + +++ + + LPEDYPSISPP FELS P+
Sbjct: 10 EIESLASIFPDLLEETTDKQLVFKFD-------RDIGMTINLPEDYPSISPPIFELSGPY 62
Query: 425 MDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVLQ 538
+ R+ K LH +L+++Y++N+G VIF W+ ++++ ++
Sbjct: 63 LRREQKEVLHNSLNDVYIENIGFPVIFNWISLVQDFIR 100
>U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical
protein F56D2.2 protein.
Length = 451
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 368 LPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMI 523
LP DYPS+S PK EL + WM+++ T+ L I +N V+F + I
Sbjct: 82 LPNDYPSVSSPKLELESYWMNQEQMTSCETELARICEENQMMEVLFMCYQTI 133
>U13644-1|AAB52683.1| 437|Caenorhabditis elegans Hypothetical
protein F56D2.5 protein.
Length = 437
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +2
Query: 368 LPEDYPSISPPKFELSAPWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVL 535
LP DYP++S PK EL + WM+++ T+ L +I +N V+F + I +++
Sbjct: 80 LPNDYPTVSSPKLELESYWMNQEQMTSCETELAKICEENQMMEVLFMCYQTIIDLM 135
>U00048-10|AAB53823.2| 852|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 16 protein.
Length = 852
Score = 31.9 bits (69), Expect = 0.63
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +2
Query: 416 APWMDRQTKTNLHKTLHEIYLDNVGETVIFQWVEMIREVLQTVC-KVEKKIEVTEPEVDS 592
A W+ +T N+ + L E ++ + V ++M + L+ + K+ K+ + P V
Sbjct: 480 AQWLGGETSENVDRVLLEWVRRSISK-VSKSNMKMDQPALEALDEKISAKL-LQFPHVSI 537
Query: 593 LDLT--TIEINCPEITHGEIIADRKSIFQGHAAEVHSIDDVKAVLNNLNRTERS*MLHII 766
D IE PE+ + R++ H A + ++DV A L + ++R ++H +
Sbjct: 538 ADAARRAIEAKLPELAR--LFIRRETDDANHVAVLLQLNDVSAALQKASASQRPQLIHQV 595
Query: 767 CMHI 778
H+
Sbjct: 596 VRHL 599
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -2
Query: 840 SPVIITVLXYIRTXXQFSFYSICIHIMCSI*DLSVLFKLF-STAFTSSILCTSAACP-WN 667
S +II+++ + ++ Y++ + ++ S+ +F ST FT++ + T+A C W
Sbjct: 130 SVLIISIISKVAKIFDYTDYTLLLFVLILFLFSSIAMSIFFSTLFTNANIATAATCVLWF 189
Query: 666 MLFL 655
+ F+
Sbjct: 190 VFFI 193
>Z70212-10|CAA94169.2| 319|Caenorhabditis elegans Hypothetical
protein R04D3.10 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 786 FYSICIHIMCSI*DLSVLFKLFSTAFTSSILCTSAACPWNMLFLSAMI---SPCVI 628
F+S+CI ++ ++ L+++ FS FT L AA ++ +S +I +PC I
Sbjct: 93 FHSLCISVLMTVNRLAIILNPFSEMFTQRRLFGYAAVIAIVVLISLLIPYFTPCRI 148
>Z50177-8|CAA90548.2| 319|Caenorhabditis elegans Hypothetical
protein R04D3.10 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 786 FYSICIHIMCSI*DLSVLFKLFSTAFTSSILCTSAACPWNMLFLSAMI---SPCVI 628
F+S+CI ++ ++ L+++ FS FT L AA ++ +S +I +PC I
Sbjct: 93 FHSLCISVLMTVNRLAIILNPFSEMFTQRRLFGYAAVIAIVVLISLLIPYFTPCRI 148
>AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical
protein Y32H12A.2 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = +2
Query: 254 IEALKSIYTEELTIDSEITR-SYTIRIEE-NKKEVLLYVTLPEDYP------SISPPKFE 409
I ++ + T++++ + R SY I + N +++ Y+++P DYP I+ P+
Sbjct: 510 IASIPTSLTKKISNSAATDRFSYKIEASDGNGRKLTAYISIPADYPRHTALFGIAAPEDS 569
Query: 410 LSAPWMDRQTKTNLHKTLHEIYLDNV 487
S+ + RQ + L+ H Y+D+V
Sbjct: 570 ESSTEVARQIEDRLNTEAH--YVDDV 593
>AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical
protein Y53G8AR.5 protein.
Length = 287
Score = 28.3 bits (60), Expect = 7.8
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Frame = +2
Query: 251 EIEALKSIYTEELTIDS--EITRSY------TIRIEENKKEVLLYVTLPEDYPSISPPKF 406
EIEAL SI+ + + ++S E +R Y ++ E VL+ +T+ E YP++SP
Sbjct: 7 EIEALCSIW-DGVHVESKLEASRRYLKHKIKSLEDESTSASVLIEMTVSEGYPAVSPTVT 65
Query: 407 ELSAPWMDRQTKTNLHKTLHEIYLDNVGETVI 502
+ + L + + EI N E I
Sbjct: 66 LSNPRGIGEPEFRELQRQIQEIIEQNSDEMPI 97
>AC006642-5|AAF39826.2| 87|Caenorhabditis elegans Hypothetical
protein F49H12.4 protein.
Length = 87
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 524 REVLQTVCKVEKKIEVTEPEVDSLDLTTIEINCPEITHGEIIADRKSI 667
R L+ + +V K+ E TE ++DLTT +C E++ +I + +S+
Sbjct: 38 RSKLEALTQVAKQREPTEYTEFTIDLTTKMDSCVELSSPQISSKEESV 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,675,330
Number of Sequences: 27780
Number of extensions: 343598
Number of successful extensions: 1078
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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