Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K14
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 33 0.32
09_02_0495 + 9880714-9881196 33 0.42
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.7
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 30 2.3
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 30 2.3
06_03_1414 + 30012195-30012360,30012448-30012830 30 3.0
01_03_0005 + 11568545-11569119,11569179-11569191 30 3.0
07_03_1136 + 24218601-24218734,24218769-24219906 29 3.9
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 5.2
05_06_0282 + 26915249-26915881 29 5.2
05_01_0141 - 937428-937717,938483-938705 29 5.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.2
>07_01_0479 + 3606663-3607448
Length = 261
Score = 33.1 bits (72), Expect = 0.32
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -1
Query: 840 PXPPXXXXXXPXGXGPRXGKXFFXGGXPPXGXGGKNPPXGXRXXXPPPXXP 688
P PP P GP + GG PP G PP PPP P
Sbjct: 202 PPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGP 252
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 841 PXTPXPXXVXPPXXGAPXGXKXFFXGXPPXXXGGXKPPP 725
P P P PP G P G PP G PPP
Sbjct: 202 PPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPP 240
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 765 GXPPXGXGGKNPPXGXRXXXPPPXXP 688
G PP GG PP G PPP P
Sbjct: 192 GVPPAFPGGPPPPPGPFMRGPPPMGP 217
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 709 GXPPPXGGVFXPPXXGGGPPXKKXFXXXGPPP 804
G PPP G F GPP + GPPP
Sbjct: 199 GGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPP 230
>09_02_0495 + 9880714-9881196
Length = 160
Score = 32.7 bits (71), Expect = 0.42
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Frame = -2
Query: 839 PXPRPXXXXXPXGGGPXXXKXFFXGG-PPPXXG---GXKTPPXGGGXPXXPPXP 690
P P GGG F G PPP G G PP GGG P P P
Sbjct: 53 PPPAGSSSSSSSGGGDGGAGGLFGGTYPPPPPGVMPGAFAPPFGGGFPYGPAPP 106
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -2
Query: 839 PXPRPXXXXXPXGGGPXXXKXFFXGGPPPXXGGXKTPPXGGGXPXXPP 696
P P P P P PPP G PP G P PP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 767 GGPPPXXGGXKTPPXGG-GXPXXPPXP 690
GGPPP G PP GG G P P P
Sbjct: 1670 GGPPPPMGMPGMPPMGGMGMPPMGPGP 1696
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 767 GGPPPXXGGXKTPPXGG-GXPXXPPXP 690
GGPPP G PP GG G P P P
Sbjct: 1670 GGPPPPMGMPGMPPMGGMGMPPMGPGP 1696
>06_03_1414 + 30012195-30012360,30012448-30012830
Length = 182
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 691 GXGGXXGXPPPXGGVFXPPXXGG 759
G GG G PPP G PP GG
Sbjct: 133 GGGGGGGSPPPSGVPLHPPAAGG 155
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -2
Query: 833 PRPXXXXXPXGGGPXXXKXFFXGGPPPXXGGXKTPPXGGGXPXXPP 696
P P GGG + PPP GG GGG PP
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPP 115
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 767 GGPPPXXGGXKTPPXGGGXPXXPPXP 690
G P P GG PP GGG P P
Sbjct: 96 GAPGPLGGGGARPPGGGGGGGPPSLP 121
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = -1
Query: 840 PXP-PXXXXXXPXGXGPRXGKXFFXGGXPPXGXGGKNPP 727
P P P P G G G G PP G GG PP
Sbjct: 80 PRPLPIKLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPP 118
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -1
Query: 768 GGXP-PXGXGGKNPPXGXRXXXPPPXXP 688
GG P P G GG PP G PP P
Sbjct: 95 GGAPGPLGGGGARPPGGGGGGGPPSLPP 122
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 810 PXGXGPRXGKXFFXGGXPPXGXGGKNPPXG 721
P G G R G F G P G GG++ P G
Sbjct: 1027 PGGFGGRDGPGGFGGRDGPGGFGGRDGPGG 1056
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 810 PXGXGPRXGKXFFXGGXPPXGXGGKNPPXG 721
P G G R G F G P G GG+ P G
Sbjct: 1045 PGGFGGRDGPGGFIGREGPGGFGGREGPVG 1074
>05_06_0282 + 26915249-26915881
Length = 210
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = -2
Query: 839 PXPRPXXXXXPX---GGGPXXXKXFFXGGPPPXXGGXKTPPXGG 717
P PRP P GGG + G PPP GG P GG
Sbjct: 62 PSPRPHGRVTPLADGGGGGVLRRPPGRGPPPPGPGGHVGPLSGG 105
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 691 GXGGXXGXP-PPXGGVFXPPXXGGGPPXKKXF-XXXGPPPXG 810
G GG G P PP G + PP PP + G PP G
Sbjct: 23 GGGGGHGYPYPPQQGYYPPPPTAYPPPPPAGYGGGYGYPPAG 64
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 839 PXPRPXXXXXPXGGGPXXXKXFFXGGPPPXXGGXKTPPXGGGXPXXP 699
P P P GG P PP GG PP G G P P
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPP 1230
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 691 GXGGXXGXPPPXGGVFXP--PXXGGGPPXKKXFXXXGPPPXG 810
G GG G P P G P P GGPP PP G
Sbjct: 1191 GHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 691 GXGGXXGXPPPXGGVFXPPXXGGGPPXKKXFXXXGPPP 804
G GG PPP GG+ PP PP F PPP
Sbjct: 1144 GIGGVP-PPPPVGGLGGPP----APPPPAGFRGGTPPP 1176
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = +1
Query: 697 GGXXGXPPPX---GGVFXPPXXGGGP-PXKKXFXXXGPPP 804
GG PPP GGV PP G P P GPPP
Sbjct: 1180 GGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPP 1219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,930
Number of Sequences: 37544
Number of extensions: 285012
Number of successful extensions: 882
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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