Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K13
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0083 + 631196-631675 33 0.32
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.43
07_01_0080 + 587674-588510 32 0.56
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 0.98
04_04_1351 - 32827136-32827984 31 1.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.3
07_01_0479 + 3606663-3607448 30 3.0
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 30 3.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.0
07_01_0176 - 1244704-1245102 29 5.2
02_05_1062 - 33834305-33834694,33835190-33835333,33835466-338355... 29 5.2
07_01_0277 - 2038757-2039542 29 6.9
03_06_0242 + 32596846-32597268 28 9.2
>01_01_0083 + 631196-631675
Length = 159
Score = 33.1 bits (72), Expect = 0.32
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 446 PXGGGGGXFFFXXKXXPPXGGGGXFFXPPXPXPPP 550
P GGGGG + GGGG F P P P P
Sbjct: 80 PQGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPPNP 114
Score = 32.3 bits (70), Expect = 0.56
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 440 FXPXGGGGGXFFFXXKXXPPXGGGGXFFXPPXPXPPPKXXXP 565
+ P GGGG + + GGGG F P P PPP P
Sbjct: 77 YPPPQGGGGGYIPYYQPPAGGGGGGGGFNYPAP-PPPNPIVP 117
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 32.7 bits (71), Expect = 0.43
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 493 PPPXGGGXFFXAPXPXPPPKXPXP 564
PPP G F AP P PPP P P
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPP 65
>07_01_0080 + 587674-588510
Length = 278
Score = 32.3 bits (70), Expect = 0.56
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 454 GGGGXFFFXXKXXPPPXGGGXFFXAPXPXPPPKXPXP 564
GG G F PPP G P P PPP P P
Sbjct: 83 GGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPP 119
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.5 bits (68), Expect = 0.98
Identities = 20/76 (26%), Positives = 20/76 (26%)
Frame = -3
Query: 463 PPPPXXXKKXXXXGGXKXFFPXXXGXPKKXXXPXXXPKXXFXXPXXXGGGPPXXKXXXXX 284
PPPP G P P P P G GPP
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPS---AAGAGSGPPPPPPPAAP 358
Query: 283 GXXNPPPRGXXPPPXP 236
PP G PPP P
Sbjct: 359 AAPRPPGPGPGPPPPP 374
>04_04_1351 - 32827136-32827984
Length = 282
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 452 GGGGGXFFFXXKXXPPXGGGGXFFXPPXPXPPPKXXXP 565
GGG G + PP GG PP P P P P
Sbjct: 160 GGGSGGGGYSPSPSPPKRHGGRKACPPSPTPTPSTPTP 197
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 2.3
Identities = 31/102 (30%), Positives = 33/102 (32%), Gaps = 3/102 (2%)
Frame = -3
Query: 532 GGXKKXPPPPXGGGXFXXKKKXPPPPPXXXKKXXXXGGXKXFFP-XXXGXPKKXXXPXXX 356
GG PPPP GG + PP PP GG P G P P
Sbjct: 1116 GGITGVPPPPPIGG--LGGHQAPPAPPL----PEGIGGVPPPPPVGGLGGPPAPPPPAGF 1169
Query: 355 PKXXFXXPXXXGG-GPPXXKXXXXXGXXNPP-PRGXXPPPXP 236
+ P GG PP G PP P G PP P
Sbjct: 1170 -RGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMP 1210
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -3
Query: 925 PPPPGXXXX-PXXXXXXXXGXGKXGGPRGGXXXGXXPXFF*NPXXGXPPPXXXXP 764
PPPPG P G GGP G G P F P PPP P
Sbjct: 202 PPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPF-RPGMPPPPPGPQQP 255
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 322 GGGPPXXKXXXXXGXXNPPPRGXXPPP 242
GGGPP + G P PRG P P
Sbjct: 192 GGGPPEYQPRDYQGRGGPRPRGGMPQP 218
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 493 PPPXGGGXFFXAPXPXPPPKXPXP 564
PPP G +P P PPP P P
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPPP 574
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/93 (25%), Positives = 25/93 (26%), Gaps = 2/93 (2%)
Frame = -3
Query: 514 PPPPXGGGX-FXXKKKXPPPPPXXXKKXXXXGGXKXFFPXXXGXPK-KXXXPXXXPKXXF 341
PPPP G F PPPPP + P P P P
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPP 610
Query: 340 XXPXXXGGGPPXXKXXXXXGXXNPPPRGXXPPP 242
P PP PPP PPP
Sbjct: 611 ILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPP 643
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 494 PPXGGGGXFFXPPXPXPPPKXXXP 565
PP G F PP P PPP P
Sbjct: 553 PPSGNKPAFSPPPPPPPPPPPPLP 576
>07_01_0176 - 1244704-1245102
Length = 132
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 452 GGGGGXFFFXXKXXPPXGGG 511
GGGGG FF PP GGG
Sbjct: 42 GGGGGGFFEVPWFGPPGGGG 61
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 452 GGGGGXFFFXXKXXPPXGGGG 514
GGGGG FF P GGGG
Sbjct: 41 GGGGGGGFFEVPWFGPPGGGG 61
>02_05_1062 -
33834305-33834694,33835190-33835333,33835466-33835516,
33836098-33836262,33836566-33836670,33836729-33836869
Length = 331
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 553 FWGGXXXGGXKKXPPPPXGGGXF 485
FWGG G PPP G G F
Sbjct: 244 FWGGWVRGPTVSLDPPPMGSGHF 266
>07_01_0277 - 2038757-2039542
Length = 261
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = +2
Query: 365 GGPXFFWXPXXGGEKXFXPPXXXXFFXPXGGGGGXFFFXXKXXPPXGG---GGXFFXPPX 535
GG ++ GG + ++ P G G + P G G F PP
Sbjct: 195 GGGGAYYGDLYGGVYRYPATYFPSYYLPRQPGAGVYQPPTYMSYPDGFDPYAGDIFAPPP 254
Query: 536 PXPPPK 553
P PPP+
Sbjct: 255 PPPPPE 260
>03_06_0242 + 32596846-32597268
Length = 140
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +2
Query: 446 PXGGGGGXFFFXXKXXPPXGGGGXF--FXPPXPXPPPKXXXPG 568
P GGGGG P G P P PPPK PG
Sbjct: 14 PSGGGGGGGVGAPPYRPAAGSVWSLPGMTPRPPGPPPKYQQPG 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,737,793
Number of Sequences: 37544
Number of extensions: 507663
Number of successful extensions: 3164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2698
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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