Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K12
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    27   2.6  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.6  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   8.0  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 402 DGAPYLSTPAQTLSGVICDRERSFRTLSATL 310
           D A YL+T  Q   GVI D E+S   L+  L
Sbjct: 739 DRAHYLTTRIQKNQGVITDNEKSIERLTEAL 769


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 814 TCLLQLIMVTNKAIASQISXIKHFFH 737
           +CL+ L   TN  I  ++   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 354 LLRIMFGLVCSSTALHLPQELKIPIIWNASVNS 452
           +L   FG VC S    L  E K P+  N +++S
Sbjct: 115 ILTPKFGCVCVSVDYRLAPESKFPVAHNDAIDS 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,365
Number of Sequences: 5004
Number of extensions: 54557
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)