Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K10
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.025
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.025
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.058
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.13
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.24
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 8.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.025
Identities = 33/100 (33%), Positives = 33/100 (33%)
Frame = -3
Query: 902 GXXGGXXGGKGPAXGXPPXXGXGXXXXXXXGGGXXGGXPXXXRXXXGXGXXGGXXXXXXX 723
G GG GG G G PP G G G G GG G G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPP-GPG-------GFGGFGGFGGEGHHHGGHGGFGGGPGGFE- 234
Query: 722 PPGXPXXXGGNPXXPPXGGEXXXXGXPXXXXGXXGGGXGG 603
G P GG P GG G G GGG GG
Sbjct: 235 --GGPGGFGGGP-----GGFGGGLGGFGGGPGGFGGGPGG 267
Score = 33.1 bits (72), Expect = 0.058
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 915 GXPGGXPGGXXGGXGXRXGXPPPRGG--GXXXGXPXG-GGXP 799
G GG PGG GG G G P GG G G P G GG P
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 29.1 bits (62), Expect = 0.95
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -1
Query: 901 GXXGGXGGXRXPPGGXPPXXGXAXXXXXXXGGGPXXXGPXXXXXXGXG 758
G GG GG PGG G GGGP G G G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 916 GXAXXGXXGGXGGXRXPPGGXPPXXGXAXXXXXXXGGGPXXXG 788
G G GG GG PGG G GGGP G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/63 (30%), Positives = 19/63 (30%)
Frame = -1
Query: 916 GXAXXGXXGGXGGXRXPPGGXPPXXGXAXXXXXXXGGGPXXXGPXXXXXXGXGXXXGGXX 737
G G GG GG PGG G G G GP G G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP-GGFEGGPGGFGGGPG 245
Query: 736 XXG 728
G
Sbjct: 246 GFG 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.025
Identities = 28/115 (24%), Positives = 29/115 (25%)
Frame = +1
Query: 571 PRGXGXXFXAXPPXPPPXXPXXXXGXPXXXXSPPXGGXXGXPPXXXGXPGGKXXXXXXPP 750
P G G + PP PPP P PP G PP P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPL----PPQGRSAPPPPPPRSAPS--------TG 373
Query: 751 XXPXPXXXRXFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGPXPPXXPPXXPXXXP 915
P P PP PP P G P PP P P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Score = 33.9 bits (74), Expect = 0.033
Identities = 31/106 (29%), Positives = 31/106 (29%), Gaps = 2/106 (1%)
Frame = +1
Query: 604 PPXPPPXXPXXXXGXPXXXXSPPXGGXX--GXPPXXXGXPGGKXXXXXXPPXXPXPXXXR 777
PP PPP P P PP G PP P PP P
Sbjct: 388 PPAPPPAIPGR--SAPAL---PPLGNASRTSTPPV----PTPPSLPPSAPPSLPPSAPPS 438
Query: 778 XFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGPXPPXXPPXXPXXXP 915
G P P P P P G P A P PP P P P
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLP--AGMPAAPPLPPAAPAPPPAPAP 482
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = +1
Query: 562 PPXPRGXGXXFXAXPPXPPPXXPXXXXGXPXXXXSPPXGGXXGXPPXXXGXPGGKXXXXX 741
PP P A P PP P G P PP PP G P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI--APPLPAGMPAAPPLPPA 472
Query: 742 XPPXXPXP 765
P P P
Sbjct: 473 APAPPPAP 480
Score = 27.5 bits (58), Expect = 2.9
Identities = 27/112 (24%), Positives = 29/112 (25%), Gaps = 3/112 (2%)
Frame = +2
Query: 569 PPGGXGXLXGPXPPXPXPXXXGXXXGXPXXXXPPLXAGXXGXRXXTGGNPGXXXXXXXXP 748
PP L P PP P G P P+ + P P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKP---------P 291
Query: 749 XXXPXPXXXAXXXAXXXGXPPPXGXPXXX---PPPRGGGXPXRXPXPPXXPP 895
P A A PPP P PP G G PP PP
Sbjct: 292 LPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.058
Identities = 31/126 (24%), Positives = 33/126 (26%)
Frame = +1
Query: 550 PXXXPPXPRGXGXXFXAXPPXPPPXXPXXXXGXPXXXXSPPXGGXXGXPPXXXGXPGGKX 729
P PP P+ A PP P P P +PP G PP
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAP--SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Query: 730 XXXXXPPXXPXPXXXRXFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGPXPPXXPPXXPXX 909
P P G PP P P P P G P P P P
Sbjct: 1104 VPKPSVAVPPVPAP----SGAPP-VPKPSVAAPPVPVP-SGAPPVPKPSVAAPPVPAPSG 1157
Query: 910 XPXXXK 927
P K
Sbjct: 1158 APPVPK 1163
Score = 30.3 bits (65), Expect = 0.41
Identities = 34/127 (26%), Positives = 36/127 (28%), Gaps = 4/127 (3%)
Frame = +1
Query: 547 SPXXXPPXPRGXGXXFXAXPPXPPPXXPXXXXGXPXXXXSPPXGGXXGXP-PXXXGXPGG 723
+P PP P+ A PP P P P P P P G P
Sbjct: 1087 APSGIPPVPKPS----VAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 724 KXXXXXXPPXXPXPXXXRXFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGP---XPPXXPP 894
PP P P G PP P P P P G P P PP PP
Sbjct: 1143 PKPSVAAPPV-PAPS------GAPPV-PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Query: 895 XXPXXXP 915
P
Sbjct: 1195 SEAPPVP 1201
Score = 29.9 bits (64), Expect = 0.54
Identities = 31/115 (26%), Positives = 32/115 (27%), Gaps = 4/115 (3%)
Frame = +1
Query: 562 PPXPRGXGXXFXAXPPXPPPXXPXXXXGXPXXXXS---PPXGGXXGXPPXXXGXPGGKXX 732
PP P G P P P P S PP G PP P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV----PKPSVA 1167
Query: 733 XXXXP-PXXPXPXXXRXFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGPXPPXXPP 894
P P P + G PP PP P P G P P P PP
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPV--PPPSEAPPVPKPSVGVPPV--PPPSTAPP 1218
Score = 29.9 bits (64), Expect = 0.54
Identities = 31/118 (26%), Positives = 33/118 (27%)
Frame = +1
Query: 550 PXXXPPXPRGXGXXFXAXPPXPPPXXPXXXXGXPXXXXSPPXGGXXGXPPXXXGXPGGKX 729
P PP P+ A PP P P P P G PP G
Sbjct: 1136 PSGAPPVPKPS----VAAPPVPAPSGAPPVP-KPSVAAPPVPAPSSGIPPVPKPAAG--- 1187
Query: 730 XXXXXPPXXPXPXXXRXFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGPXPPXXPPXXP 903
PP P + G PP PP P P G P P P P P
Sbjct: 1188 -VPPVPPPSEAPPVPKPSVGVPPV--PPPSTAPPVPTPSAGLPPV--PVPTAKAPPVP 1240
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 806 PPPXGXPXXXPPPRGGGXPXRXPXPPXXPPGXPP 907
PP P PPP P P P PP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 745 PPXXPXPXXXRXFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGPXPPXXPP 894
PP P P PP P P G AGP PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 0.72
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 806 PPPXGXPXXXPPPRGGGXPXRXPXPPXXPPGXPPGXP 916
P P P P P GG P P P G PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 607 PXPPPXXPXXXXGXPXXXXSPPXGGXXGXPPXXXGXPGGKXXXXXXPPXXP 759
P PPP P PP G PP PG PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 566 PPPGGXGXLXGPXPPXPXPXXXGXXXGXPXXXXPPLXAG 682
PPP + GP PP P P G P P + AG
Sbjct: 752 PPPAPI--MGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +1
Query: 748 PXXPXPXXXRXFXGXPPXXPPPXXXXXXXPXPXXGGXPXAGPXPPXXPPXXP 903
P P P P PP P P AG PP PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +2
Query: 806 PPPX---GXPXXXPPPRG--GGXPXRXPXPPXXPPGXPPG 910
PPP G P PPP G G P P PP PP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGP---PPPPPPPPAVSAG 788
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 551 PKXXRPPPGGXGXLXGPXPPXPXP 622
P PPPG G GP PP P P
Sbjct: 761 PPPPPPPPGVAG--AGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.8
Identities = 18/72 (25%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +1
Query: 604 PPXPPP--XXPXXXXGXPXXXXSPPXGGXXGXPPXXXGXPGGKXXXXXXPPXXPXPXXXR 777
PP PPP P P G PP G G PP R
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 778 XFXGXPPXXPPP 813
+ P P P
Sbjct: 792 YYAPAPQAEPEP 803
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.24
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 812 PXGXPXXXPPPRGGGXPXRXPXPPXXPPG 898
P G P PPP G P + P PP PPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP--PPG 31
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = -3
Query: 914 GXXXGXXGGXXGGKGPAXGXPPXXGXGXXXXXXXGGGXXGGXPXXXRXXXGXGXXG 747
G G GG G +G G G G GGG GG R G G
Sbjct: 138 GGRGGFRGGRGGSRG-GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,019
Number of Sequences: 5004
Number of extensions: 26869
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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