Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K10
         (943 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.061
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.061
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = +2

Query: 800 GXPPPXGXPXXXP--PPRGGGXPXRXPXPPXXPPGXPP 907
           G P P   P   P  P RG         PP  PPG PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 27.5 bits (58), Expect = 0.19
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +2

Query: 809 PPXGXPXXXPPPRGGGXPXRXPXPPXXPPGXPPGXP 916
           P  G P   P P       +   PP    G PPG P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = -2

Query: 915 GXPGGXPGGXXGGXGXRXGXPPPRGGGXXXGXPXG 811
           G PG  P         + G PP    G   G P G
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 607 PXPPPXXPXXXXGXPXXXXSPPXGGXXGXPP 699
           P   P  P      P     PP GG  G PP
Sbjct: 27  PHQSPQAPQRG-SPPNPSQGPPPGGPPGAPP 56


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 38  NSLMILGNYLVX*IVYH 88
           N +++LGN LV   VYH
Sbjct: 76  NVMVVLGNVLVILAVYH 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,154
Number of Sequences: 438
Number of extensions: 6190
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)