Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K09
(946 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 30 2.3
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 28 3.7
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 24 6.7
07_01_0080 + 587674-588510 29 7.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 7.4
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 28 9.4
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 28 9.4
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 28 9.4
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 800 GGGGGGGXXXXXXXKXPPPXXGG 868
GGGGGGG PPP GG
Sbjct: 78 GGGGGGGGGTVMYTSPPPPYSGG 100
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 800 GGGGGGGXXXXXXXKXPPP 856
GGGGGGG K PPP
Sbjct: 21 GGGGGGGGFSPTAAKPPPP 39
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 855 GGGXFXXXXXXXPPPPPP 802
GGG F PPPP P
Sbjct: 25 GGGGFSPTAAKPPPPPSP 42
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 819 PPPPPPP 799
PPPPPPP
Sbjct: 57 PPPPPPP 63
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 819 PPPPPPP 799
PPPPPPP
Sbjct: 38 PPPPPPP 44
Score = 23.4 bits (48), Expect(2) = 6.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 816 PPPPPPXXXXKKXK 775
PPPPPP +K K
Sbjct: 80 PPPPPPPPKQEKAK 93
>07_01_0080 + 587674-588510
Length = 278
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 865 PPRXGGXFXXXXXXXPPPPPP 803
PPR GG PPPPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPP 99
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 23.8 bits (49), Expect(2) = 7.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 819 PPPPPPP 799
PPPPPPP
Sbjct: 712 PPPPPPP 718
Score = 23.0 bits (47), Expect(2) = 7.4
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = -2
Query: 867 PPXXGGGXFXXXXXXXPPPPPP 802
PP G PPPPPP
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPP 672
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Frame = -2
Query: 867 PPXXGGGX----FXXXXXXXPPPPPPP 799
PP GGG F PPPPPPP
Sbjct: 43 PPGGGGGDRRGGFQLPPDAAPPPPPPP 69
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 28.3 bits (60), Expect = 9.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 173 PKEDNSLNTLAESAKKTIEELREKVE 250
PKE ++ T+A + +KT EE+R +++
Sbjct: 91 PKESSTATTMAAATEKTAEEIRRELQ 116
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 28.3 bits (60), Expect = 9.4
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 206 ESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 340
E A+K E L+ +K +L PE +K+ F +++ +F +F L+P E
Sbjct: 259 EEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,730
Number of Sequences: 37544
Number of extensions: 419489
Number of successful extensions: 13454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9424
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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