Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K06
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    29   0.84 
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   2.6  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    27   3.4  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   6.0  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    26   7.9  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   7.9  

>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = -1

Query: 857 EPCINCCHSSNIQQLCSVEWTGIY--LFYYEYSIVIRWRRKNVC--MYTRNPRSCSALSR 690
           EP  +  HS N+      EW  +Y  LF   YS+       N+C   ++       +LS 
Sbjct: 133 EPPASTVHSDNLGDAVEHEWVELYDPLFPTSYSVFKESDYANLCETNWSHYVNQVPSLSI 192

Query: 689 *GTMIAVLNFGLQSCGIYSPPSLMP*PSTKSPS 591
              +  ++N      GI  PPSL+   +   PS
Sbjct: 193 EAKLSNIVN--ASKSGIGPPPSLLSHATLARPS 223


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 FNFYDAYFVIIEM*NPATLSYDPKNKNMKIILK 338
           FN Y  Y+ ++ +   ATL+ D  NK+   I K
Sbjct: 544 FNLYSGYYALMTLTYCATLTKDDANKSNNFITK 576


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 854 PCINCCHSSNI-QQLCSVEWTG 792
           P +N CHSS I   L +V W G
Sbjct: 241 PLVNTCHSSGIASSLANVRWIG 262


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 336 KKYENMSSICFLEEKNNIWSYNNTNFYNIFSSW 434
           K  E++ ++  +EEK+  W      ++N    W
Sbjct: 517 KSRESIKTLKLIEEKDEYWEPETAGYFNTIVGW 549


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 373 RKKIIYGVITILIFIIFSHPGLYG 444
           ++K+++  +T+LIF++ S   LYG
Sbjct: 30  KQKMLWTGVTLLIFLVMSQVPLYG 53


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 FIEKHNILKYLHEEVNVNLTSNAFTNCDYHD 552
           F+E H+  ++ HE  ++ L  NA T   + D
Sbjct: 303 FLENHDFPRFFHETKDIALALNALTALIFMD 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,024
Number of Sequences: 5004
Number of extensions: 68033
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)