Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K05
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 212 7e-56
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 211 1e-55
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 211 1e-55
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.67
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 4.7
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 4.7
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 4.7
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 8.2
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 8.2
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 212 bits (517), Expect = 7e-56
Identities = 97/146 (66%), Positives = 119/146 (81%)
Frame = +3
Query: 420 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 599
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 600 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 779
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGK 233
Query: 780 AYISLPRGKGXRLTIAXERDKRXAAK 857
++ISLP+GKG +L+I ERD+R A K
Sbjct: 234 SWISLPKGKGVKLSITEERDRRRALK 259
Score = 191 bits (466), Expect = 1e-49
Identities = 83/113 (73%), Positives = 96/113 (84%)
Frame = +2
Query: 80 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 259
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 260 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 418
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HR
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHR 113
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 211 bits (515), Expect = 1e-55
Identities = 97/146 (66%), Positives = 119/146 (81%)
Frame = +3
Query: 420 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 599
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 600 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 779
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Query: 780 AYISLPRGKGXRLTIAXERDKRXAAK 857
++ISLP+GKG +L+I ERD+R A K
Sbjct: 234 SWISLPKGKGVKLSITEERDRRRALK 259
Score = 193 bits (470), Expect = 3e-50
Identities = 84/113 (74%), Positives = 96/113 (84%)
Frame = +2
Query: 80 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 259
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 260 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 418
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HR
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHR 113
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 211 bits (515), Expect = 1e-55
Identities = 97/146 (66%), Positives = 119/146 (81%)
Frame = +3
Query: 420 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 599
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 600 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 779
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Query: 780 AYISLPRGKGXRLTIAXERDKRXAAK 857
++ISLP+GKG +L+I ERD+R A K
Sbjct: 234 SWISLPKGKGVKLSITEERDRRRALK 259
Score = 192 bits (467), Expect = 7e-50
Identities = 83/113 (73%), Positives = 96/113 (84%)
Frame = +2
Query: 80 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 259
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 260 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 418
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HR
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHR 113
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 788 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 663
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 334 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 179
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 542 QSQRFHPVRHCNYED 586
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 600 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 704
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 755 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRS 576
H P GEG R V N + + +H+P+ S+ +T PGLK + + +
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNN 343
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 97 LRASRHVGQVLNRERKKKKS 38
LR+S + ++LNR R++KKS
Sbjct: 299 LRSSAELEKILNRRRRRKKS 318
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 713 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLD 597
LD+H V S+ D A T + AS DH VPG K +
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRKFE 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,669
Number of Sequences: 5004
Number of extensions: 76552
Number of successful extensions: 229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -