Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K05
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 198 3e-51
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.004
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 31 1.5
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 4.4
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 4.4
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 29 5.9
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 198 bits (484), Expect = 3e-51
Identities = 95/146 (65%), Positives = 111/146 (76%)
Frame = +3
Query: 420 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 599
I EA +KLCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +
Sbjct: 113 IQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSV 172
Query: 600 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 779
KFE GNL +TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG K
Sbjct: 173 KFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNK 232
Query: 780 AYISLPRGKGXRLTIAXERDKRXAAK 857
A +SLP G G RL+IA ERDKR A K
Sbjct: 233 ALVSLPTGAGIRLSIAEERDKRMAQK 258
Score = 172 bits (418), Expect = 3e-43
Identities = 77/111 (69%), Positives = 91/111 (81%)
Frame = +2
Query: 86 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 265
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 266 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 418
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HR
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHR 112
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/63 (34%), Positives = 25/63 (39%)
Frame = +2
Query: 659 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHXPHHRRXAG 838
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 839 QAH 847
+ H
Sbjct: 460 EHH 462
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 659 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHXPHH 823
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +2
Query: 650 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHXPHH 823
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEH 522
Score = 35.9 bits (79), Expect = 0.039
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +2
Query: 698 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHXPHHRRXAGQAH 847
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 35.5 bits (78), Expect = 0.051
Identities = 28/113 (24%), Positives = 36/113 (31%), Gaps = 2/113 (1%)
Frame = +2
Query: 515 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACG-HHRVPRETSR 688
HH + + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 689 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHXPHHRRXAGQAH 847
H H HG H H H G G H H P H G+ H
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 568
Score = 35.1 bits (77), Expect = 0.068
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Frame = +2
Query: 515 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 682
HH + + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 683 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHXPHHRRXAGQAH 847
+ AH G HG H H H G H G H GH H A H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 34.7 bits (76), Expect = 0.089
Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 1/115 (0%)
Frame = +2
Query: 515 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 691
HH + + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 692 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHXPHHRRXAGQAHXSQ 856
AH G HG H H G GVH + H H A H +
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH-HGHHESHGHGHHAPAHHGHHGE 608
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Frame = +2
Query: 629 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 799
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH-HGA 701
Query: 800 RQGHXPHHRRXAGQAHXSQ 856
GH H S+
Sbjct: 702 HHGHHDDKENHHHHGHHSK 720
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = +2
Query: 659 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHXPHHRRXAG 838
HH P H G HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHG 690
Query: 839 QAHXSQG 859
AH G
Sbjct: 691 -AHHEHG 696
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +2
Query: 656 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 787
G H P H H HG H H ++ H+ GH H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Frame = +2
Query: 656 GHHRVPRETSRLLRHCAHQGLH----GTHLRHEVEQRVHNRQGHEG----VHLAAARQG- 808
G H P H H G H H HE H+ H G H A A G
Sbjct: 411 GTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGH 470
Query: 809 HXPHHRRXAGQAHXSQ 856
H HH A H +
Sbjct: 471 HGEHHHAPAHHGHHGE 486
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +2
Query: 698 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--XPHHRRXAGQAHXSQG 859
HC G HG H R H G G R GH PHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 617 LVYDHGRP*LGACGHHRVPRETSRLLRH 700
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 617 LVYDHGRP*LGACGHHRVPRETSRLLRH 700
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +2
Query: 683 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HXPHHRRXAGQAHXSQG 859
+R RH H+G HG ++H H H R G H P+ H +
Sbjct: 84 ARRRRHHNHEGHHGNDMKHRENMDRKKHGTHVDHHGRVRRNGDHDPNDPNVDHTGHNHRV 143
Query: 860 RRAV 871
+R++
Sbjct: 144 KRSI 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,284,906
Number of Sequences: 27780
Number of extensions: 455168
Number of successful extensions: 1338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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