Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K04
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 152 6e-38
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 85 2e-17
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 73 4e-14
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 70 4e-13
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 56 5e-09
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 55 1e-08
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 51 3e-07
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 30 0.50
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 27 3.6
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 6.2
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 152 bits (369), Expect = 6e-38
Identities = 72/132 (54%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Frame = +3
Query: 447 EQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNN 626
EQLV +CD+KQ YTQYGG RPFGVS LY GWD GYQL+QS+PSGNYG W+A IG N
Sbjct: 108 EQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGN 167
Query: 627 SAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTR--KDNKTII 800
S + S ++QEYK+ + L EA A+A+K LSKTLD LT EK+E AT+T+ NK +
Sbjct: 168 STSVQSLMRQEYKD-DINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITKDTTKNKMVC 226
Query: 801 RILTNTEVEKLI 836
+I + E+ +++
Sbjct: 227 KIWKSDEINEVL 238
Score = 93.9 bits (223), Expect = 3e-20
Identities = 42/58 (72%), Positives = 54/58 (93%)
Frame = +1
Query: 124 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDE 297
M+R YD+RTTIFSPEGRLYQVEYA+EAI+HAG +LGI+A DGI+LAAE++ T+KLL++
Sbjct: 1 MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQ 58
Score = 54.8 bits (126), Expect = 2e-08
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +2
Query: 311 EKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIP 442
EK+Y + D+M+C+VAG+T+DAN+L N R + Q+YL + E +P
Sbjct: 63 EKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMP 106
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 84.6 bits (200), Expect = 2e-17
Identities = 49/110 (44%), Positives = 66/110 (60%)
Frame = +3
Query: 453 LVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSA 632
LV + V Q TQ GG RPFGVS+L G D+ G LYQ DPSG Y WKAT IG +S
Sbjct: 110 LVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSST 168
Query: 633 AAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRK 782
AA + L++ Y + E L +A AI L +T + +LT + +E+A ++ K
Sbjct: 169 AAKTFLEKRYND-ELELDDAVHTAILALKETFE-GELTEDNIEIAVVSTK 216
Score = 58.8 bits (136), Expect = 1e-09
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +1
Query: 124 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKL 288
M +Y T FSP G+L Q+EYA+ A++ TS+GI ATDG++LA E++ T++L
Sbjct: 1 MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSEL 55
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 73.3 bits (172), Expect = 4e-14
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Frame = +3
Query: 423 NMANLSLXEQLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGY-QLYQSDPSGNYGG 599
N+A+ E L ++ V+Q YTQ GG RPFGVS L G+D ++YQ++P+G Y
Sbjct: 98 NLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNA 157
Query: 600 WKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATL 773
WKAT IG S AA L++ +KE L+ + + + V S L++ + +E+A +
Sbjct: 158 WKATAIGRASKAAREYLEKNWKEG---LSRDETIHLAV-SSLLEVVQTASGNIELAIM 211
Score = 50.8 bits (116), Expect = 3e-07
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +1
Query: 136 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKL 288
YD ++FSP+GRL QVEY EA+ T++ + + I++ ER+N KL
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKL 54
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 70.1 bits (164), Expect = 4e-13
Identities = 39/90 (43%), Positives = 58/90 (64%)
Frame = +3
Query: 507 RPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLA 686
RPFGV++L G D+H G QLY S+PSG Y ++A IG+ S A S L +E+ + TL
Sbjct: 136 RPFGVALLIAGIDEH-GPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF-HKDMTLE 193
Query: 687 EAQALAIKVLSKTLDMTKLTPEKVEMATLT 776
EA+ L +KVL + ++ KL + V++A +T
Sbjct: 194 EAEVLILKVLRQVME-EKLDSKNVQLAKVT 222
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 136 YDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLD 294
YD FSPEGRL+QVEYA+EAI T++G+ D ++L E+R T+ L++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60
Score = 34.3 bits (75), Expect = 0.023
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +2
Query: 293 MKCFFLEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGE 433
M+ +EK+++++ + C+++G+T+DA + R+ Q + Y E
Sbjct: 59 MESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDE 105
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 56.4 bits (130), Expect = 5e-09
Identities = 26/57 (45%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 ARRYDTRTTIFSPEGRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLD 294
AR +D T+FSPEGRLYQVEYA +A ++AG TS+G+ + + ++++ +KL+D
Sbjct: 4 ARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID 60
Score = 51.2 bits (117), Expect = 2e-07
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = +3
Query: 453 LVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSA 632
L + ++ Q TQ RP GV++ + D G L++ DP+G Y G+KAT G
Sbjct: 112 LAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQT 171
Query: 633 AAVSSLKQEYKEN--ETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 806
++ L++ +K++ + L + I+ L +L T ++++ + +D+K R+
Sbjct: 172 ETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLS-TDFKSTELQIGVV--EDDKP-FRV 227
Query: 807 LTNTEVE 827
L+ E+E
Sbjct: 228 LSVEEIE 234
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 157 FSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLL 291
FSP+GRL+Q EYA +A+ +A T +GI DG++LA E+ T+KLL
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLL 58
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 50.8 bits (116), Expect = 3e-07
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = +1
Query: 133 RYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKL 288
+YD T +SP+GRL+QVEYA+EAI ++G+++ +L A +RN +L
Sbjct: 5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL 56
Score = 46.4 bits (105), Expect = 5e-06
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Frame = +3
Query: 450 QLVSWLCDVKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNS 629
+L+S + + Q TQ G+RP+GV L +G+D+ G L + PSG + T +G+ S
Sbjct: 107 RLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRS 165
Query: 630 AAAVSSLKQEYKENETTLAEAQAL-AIKVLSKTLDM-TKLTPEKVEMATLTRKDNKTI 797
+A + +++ + E L A++ L TL +LT E V ++ + + + T+
Sbjct: 166 QSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTL 223
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.50
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 630 HYCYRCMLLSTPHSFHWDQTGRADNHSAYPSPYT 529
HYC +C + P S+H R N + P+T
Sbjct: 400 HYCLKCFQVKPPRSYHCGACKRCINRYDHHCPWT 433
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 27.1 bits (57), Expect = 3.6
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 540 WDKHYGYQLYQSDPSG--NYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKV 713
+DK YG Q D N G K +N+ + L +E K E EA+ +A KV
Sbjct: 46 YDKLYGEQDLSKDLENTLNVSGTK----DSNAEEQPAKLTKEEKRVERE--EAKRMASKV 99
Query: 714 LSKTLDMTK 740
L KT++ TK
Sbjct: 100 LIKTIERTK 108
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 126 HFLYKYILFVIDMTKLIVTFVEIIFQK 46
H LYKY+LF K ++ +V F K
Sbjct: 340 HLLYKYLLFSPKFPKSLLQYVITFFSK 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,697,449
Number of Sequences: 5004
Number of extensions: 79960
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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