Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K04
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   4.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 341  PCHH*ACRFFQEKNTSSRSLLVFLRSAAK-RIPSVAKIP 228
            P H+  C  +  + +    L VF+RSA    +PS  K P
Sbjct: 929  PIHYGVCSNYLREISDGEPLYVFVRSAPNFYMPSEPKAP 967


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 88  HINHK*YI--FVEKMARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDG 249
           H+N   ++  FV  +  R DT++ IF P   +    +    +     ++ I  T G
Sbjct: 130 HVNEGQFLKAFVAAVLTRQDTQSVIFPPVYEILPQHHLDSRVIQEAQNIAIQNTQG 185


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 359 YQRLNRPCHH*ACRFFQEKNTSSRSLLV 276
           Y R N  C++   R FQ+K+  S +L V
Sbjct: 10  YCRRNFSCYYSLKRHFQDKHEQSDTLYV 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,031
Number of Sequences: 438
Number of extensions: 5784
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)