Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_K03
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.50
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 29 1.2
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 2.0
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 28 2.0
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 3.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.5
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 6.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 8.2
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 8.2
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.9 bits (64), Expect = 0.50
Identities = 22/127 (17%), Positives = 58/127 (45%)
Frame = +2
Query: 71 GPNKIEKQFFFQSI*LNFYGNRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLAR 250
G +K+ K+ + L N ++ + +NL ++++R + +Q+ + N+SS A
Sbjct: 813 GTDKLMKKIYHCEQSLKEKTNSLETLVSEKKELKNLL-DAERRSKKAIQLELENLSSQAF 871
Query: 251 QIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQFENIHKSAKMLTEI 430
+ S+ +RE+ + + +E +++ + +I +F ++ +K +
Sbjct: 872 RRNLSGSSSPSERSQSRELKLLQASEKRLKEQVEERNSLIKNIVTRFTQLNTGSKPVNTN 931
Query: 431 NEQITAM 451
E +T +
Sbjct: 932 VEALTTI 938
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +2
Query: 155 SSSSARNLFAESKQRLAER-VQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIE 331
SS+ A F ++ A+R +Q + + ++ +Q G +++ RE+ + Q+E
Sbjct: 415 SSNDAEEQFKQNVVNEAKRYLQETILRLQAIPYHLQVGQAWT---SESERELEKKKEQVE 471
Query: 332 TSEENLKKMQLIAVHIGYQFENIHKSAKMLTEINEQITAM 451
+E L + +++ + EN+ + AK + +E T +
Sbjct: 472 KKQEELMQTRIVLEEQVFLVENMIEDAKAKRKFSEVETLL 511
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 179 FAESKQRLAERVQVNMNNISSLARQI----QRGSKSNELLTKAAREMASTEHQIETSEEN 346
F+ K++ ++ + M + SL ++ Q+ K+NE+++K + H+I E+
Sbjct: 466 FSVEKEKAEQKYFLTMKSTDSLHAEVKLLRQKYQKTNEIISKMLNSQDTAVHRIIEFEDQ 525
Query: 347 LKKMQLI 367
L ++ +
Sbjct: 526 LARLSSV 532
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.9 bits (59), Expect = 2.0
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Frame = +2
Query: 278 ELLTKAAREMASTEHQIETSEENLKKMQLIA--VHIGYQFENIHKSAKMLT--EINEQIT 445
E+L A T + +S ENLK M ++ QFE H + E +E++
Sbjct: 231 EILLNRANRSVMTRYI--SSAENLKLMMILLRDKSKNIQFEAFHVFKLFVANPEKSEEVI 288
Query: 446 AMQR*---EIIGKLFLFVTTQTNGKRFNQLKAFFIVVVTKL 559
+ R ++I L F T + N ++FN +AF I + +L
Sbjct: 289 EILRRNKSKLISYLSAFHTDRKNDEQFNDERAFVIKQIERL 329
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 161 SSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQ 325
S +NL E V + + +L Q+Q + S ELL K ++ STE +
Sbjct: 957 SQLKNLTLSLVVNAEEGVFSTLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDE 1011
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 206 ERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGY 385
ER +V + L +I + + NELL K + + ++ + + ++ + +VH
Sbjct: 1502 ERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADT 1561
Query: 386 Q-FENIHKSAKMLT 424
+ EN+ K+ +ML+
Sbjct: 1562 KDLENLKKTEEMLS 1575
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +2
Query: 215 QVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQFE 394
Q ++ + I++GS + L++K + + + E KK+ I HIG
Sbjct: 16 QGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIA 75
Query: 395 NIHKSAKMLTEINEQ 439
+ A++L+ +Q
Sbjct: 76 GLAPDARVLSNYMKQ 90
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +2
Query: 125 YGNRIKMTSASSSSARNLFAESKQRLAER----VQVNMNNIS-SLARQIQRGSKSNELLT 289
+ N IK++ SS + ++ R +Q ++N + S + I+ SK +
Sbjct: 36 HSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKHLNTETPSFSVSIENPSKPSAAFN 95
Query: 290 KAAREMASTEHQIETSEENLKKMQL 364
A+ STEHQI+ +Q+
Sbjct: 96 DASLGKKSTEHQIDGIRNGSSNLQM 120
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 289 KSSKRNGINRTSD*NQ*GKFEEDAINSSPHWIS 387
K K INR ++ +ED N+SPHW S
Sbjct: 208 KKRKHENINRGTNARP---LKEDRANTSPHWYS 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,348
Number of Sequences: 5004
Number of extensions: 59352
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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