Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_K03
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   2.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   3.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 256 NLSRQRRNIVHIHLHSFSEPLFGLREQIPSATG*CGSH 143
           +L+R RR+I ++H     EP+  + +++ S+     +H
Sbjct: 14  SLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNH 51


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
 Frame = +2

Query: 38  FDILRIIHLIVGPNKIEKQFFFQSI*LNFYGNRIKMTSASSSSARNL---FAESKQRLAE 208
           F+   I +++   NKIE+      + +   GN  K  + SS+S RN    F  +  R + 
Sbjct: 174 FEREEIKNVLTKINKIEEHDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSR 233

Query: 209 RVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLK 352
               + +      ++ +R  K +    K   E  S +    + E   K
Sbjct: 234 ERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQK 281


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 38  FDILRIIHLIVGPNKIEKQFFFQSI*LNFYGNRIKMTSASSSSARN 175
           F+   I +++   NKIE+      + +   GN  K  + SS+S RN
Sbjct: 174 FEREEIKNVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRN 219


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 436 TNYSYAKMRNYWETVFVCDY 495
           TNYS   MR Y +  +  DY
Sbjct: 204 TNYSSKNMREYNDPEYKLDY 223


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 85  RKTIFFSINLI 117
           RKT+F+++NLI
Sbjct: 231 RKTLFYTVNLI 241


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 85  RKTIFFSINLI 117
           RKT+F+++NLI
Sbjct: 238 RKTLFYTVNLI 248


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 85  RKTIFFSINLI 117
           RKT+F+++NLI
Sbjct: 234 RKTLFYTVNLI 244


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 85  RKTIFFSINLI 117
           RKT+F+++NLI
Sbjct: 233 RKTLFYTVNLI 243


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 85  RKTIFFSINLI 117
           RKT+F+++NLI
Sbjct: 247 RKTLFYTVNLI 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,437
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)