Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_J24
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 140 2e-34
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 138 1e-33
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 31 0.30
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.8
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 4.8
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 4.8
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 6.4
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 8.4
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 8.4
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 140 bits (339), Expect = 2e-34
Identities = 67/99 (67%), Positives = 79/99 (79%)
Frame = +3
Query: 459 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 638
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177
Query: 639 LAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 755
LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 178 LAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
Score = 110 bits (264), Expect = 3e-25
Identities = 55/112 (49%), Positives = 65/112 (58%)
Frame = +2
Query: 143 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 322
V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD
Sbjct: 13 VETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHD 72
Query: 323 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 478
D AK V M SE LIKQIPR +G
Sbjct: 73 LDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 138 bits (333), Expect = 1e-33
Identities = 64/99 (64%), Positives = 79/99 (79%)
Frame = +3
Query: 459 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 638
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177
Query: 639 LAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 755
L N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 178 LIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
Score = 109 bits (262), Expect = 5e-25
Identities = 55/112 (49%), Positives = 65/112 (58%)
Frame = +2
Query: 143 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 322
V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD
Sbjct: 13 VEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHD 72
Query: 323 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 478
D AK V M SE LIKQIPR +G
Sbjct: 73 LDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 30.7 bits (66), Expect = 0.30
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 528 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQN 704
E + +++ G F + GHV T ELA+NV + F+ ++ +
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKG 235
Query: 705 VRSLHMKST 731
+ S+H+K++
Sbjct: 236 IASIHLKTS 244
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 140 CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 256
C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 939 CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 537 TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 692
T++I+ GT+ V LS+A+G+++ P L N H+S+ L L+K
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741
Query: 693 HW 698
H+
Sbjct: 2742 HY 2743
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 637 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 539
S+G ++ T T R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +2
Query: 578 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 679
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 623 HDS**ACSECASFHQLPCVTAQETLAEC 706
H S + S ++HQL CV Q+ L+EC
Sbjct: 52 HPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 6.4
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -3
Query: 332 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 153
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 152 RHSRTRRACH 123
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = +1
Query: 592 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 711
C FL ++ + + + +C+F T++ + +N R+++
Sbjct: 37 CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 650 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 486
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,261
Number of Sequences: 5004
Number of extensions: 67548
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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